JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEBPZOS_chr2_37191496_37209743	0/0	t0078	2861	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0079	2868	1	0	0	0	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0080	2867	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0081	2860	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0082	2868	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0083	2865	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0084	2858	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0085	2866	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0086	2866	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0087	2867	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0088	2860	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0089	2886	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0090	2893	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0091	2887	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0092	2885	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0093	2886	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0094	2860	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0095	2910	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0096	2899	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0097	2887	1	0	1	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0098	2887	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0099	2886	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0100	2887	1	0	0	1	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0101	2890	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0102	2885	1	0	0	0	0	1	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZOS_chr2_37191496_37209743	0/0	t0103	2887	1	1	0	0	0	0	copy fasta	CEBPZOS	chr2	37191496	37209743
CEBPZ_chr2_37196612_37236596	1/0	t0001	182	296	83	52	120	8	32	copy fasta	CEBPZ	chr2	37196612	37236596
CEBPZ_chr2_37196612_37236596	0/1	t0002	182	142	11	24	92	6	8	copy fasta	CEBPZ	chr2	37196612	37236596
CECR2_chr22_17364460_17563151	1/0	t0001	5636	46	1	13	24	1	6	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/1	t0002	5636	43	2	11	20	2	7	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0003	5636	39	4	6	25	2	2	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0004	5636	20	1	2	16	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0005	5637	12	3	4	3	0	2	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0006	5636	10	6	0	3	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0007	5637	10	2	7	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0008	5636	9	2	4	1	0	2	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0009	5637	9	4	2	3	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0010	5636	7	7	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0011	5637	7	0	6	0	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0012	5635	6	3	0	3	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0013	5636	6	0	2	0	2	2	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0014	5637	4	0	1	3	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0015	5636	4	3	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0016	5636	4	0	0	4	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0017	5636	3	3	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0018	5637	3	1	1	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0019	5636	3	3	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0020	5639	3	2	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0021	5638	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0022	5640	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151