JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CECR2_chr22_17364460_17563151	0/0	t0023	5636	2	0	0	1	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0024	5637	2	0	0	1	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0025	5638	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0026	5639	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0027	5636	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0028	5638	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0029	5635	2	0	0	1	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0030	5636	2	0	0	0	0	2	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0031	5640	2	2	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0032	5636	2	0	2	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0033	5639	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0034	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0035	5637	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0036	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0037	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0038	5636	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0039	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0040	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0041	5639	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0042	5637	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0043	5639	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0044	5635	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0045	5636	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0046	5636	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0047	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0048	5638	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0049	5638	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0050	5639	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0051	5639	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0052	5637	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0053	5640	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0054	5636	1	0	0	0	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0055	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0056	5637	1	0	0	0	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0057	5638	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0058	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0059	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0060	5637	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0061	5637	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0062	5637	1	0	0	0	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0063	5636	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0064	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0065	5634	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0066	5636	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0067	5636	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0068	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0069	5638	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0070	5639	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0071	5636	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0072	5635	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151