JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CECR2_chr22_17364460_17563151	0/0	t0073	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0074	5638	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0075	5637	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0076	5638	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0077	5638	1	0	1	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0078	5637	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0079	5636	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0080	5634	1	0	0	0	0	1	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0081	5635	1	0	0	0	1	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0082	5636	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0083	5637	1	1	0	0	0	0	copy fasta	CECR2	chr22	17364460	17563151
CECR2_chr22_17364460_17563151	0/0	t0084	5636	1	0	0	1	0	0	copy fasta	CECR2	chr22	17364460	17563151
CELA1_chr12_51323442_51351679	0/1	t0001	177	251	48	40	127	9	26	copy fasta	CELA1	chr12	51323442	51351679
CELA1_chr12_51323442_51351679	1/0	t0002	177	155	44	36	55	5	14	copy fasta	CELA1	chr12	51323442	51351679
CELA2A_chr1_15451732_15477091	0/0	t0000	0	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	1/1	t0001	107	428	92	86	188	18	42	copy fasta	CELA2A	chr1	15451732	15477091
CELA2A_chr1_15451732_15477091	0/0	t0002	23	1	0	0	1	0	0	copy fasta	CELA2A	chr1	15451732	15477091
CELA2B_chr1_15471104_15496395	1/1	t0001	106	405	87	82	177	16	41	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	t0002	106	6	3	0	3	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	t0003	106	2	2	0	0	0	0	copy fasta	CELA2B	chr1	15471104	15496395
CELA2B_chr1_15471104_15496395	0/0	t0004	106	1	0	0	0	0	1	copy fasta	CELA2B	chr1	15471104	15496395
CELA3A_chr1_21996657_22017542	0/1	t0001	94	418	91	76	186	18	46	copy fasta	CELA3A	chr1	21996657	22017542
CELA3A_chr1_21996657_22017542	0/0	t0002	94	1	1	0	0	0	0	copy fasta	CELA3A	chr1	21996657	22017542
CELA3B_chr1_21972022_21994354	1/1	t0001	94	434	94	81	195	16	46	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	t0002	19	7	4	1	0	2	0	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	t0003	94	2	0	0	0	0	2	copy fasta	CELA3B	chr1	21972022	21994354
CELA3B_chr1_21972022_21994354	0/0	t0004	94	1	0	0	1	0	0	copy fasta	CELA3B	chr1	21972022	21994354
CELF1_chr11_47460937_47558132	0/1	t0001	6587	111	37	12	53	2	6	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0002	6587	108	13	25	47	5	18	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0003	6588	71	3	13	42	2	11	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0004	6599	10	10	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0005	6588	6	6	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0006	6587	5	0	3	0	1	1	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0007	6589	3	3	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0008	6587	2	2	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0009	6588	2	0	0	2	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0010	6587	2	2	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0011	6587	2	2	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0012	6587	2	0	0	0	0	2	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0013	6587	1	1	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0014	6588	1	0	1	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0015	6588	1	0	0	0	0	1	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	1/0	t0016	6588	1	0	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0017	6588	1	1	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0018	6587	1	1	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0019	6587	1	1	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0020	6588	1	0	0	1	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0021	6588	1	0	1	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0022	6587	1	0	0	1	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0023	6587	1	1	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132