JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CELF1_chr11_47460937_47558132	0/0	t0024	6587	1	1	0	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0025	6587	1	0	0	1	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0026	6587	1	0	0	1	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0027	6587	1	0	0	0	0	1	copy fasta	CELF1	chr11	47460937	47558132
CELF1_chr11_47460937_47558132	0/0	t0028	6588	1	0	1	0	0	0	copy fasta	CELF1	chr11	47460937	47558132
CELF2_chr10_11012872_11341675	0/0	t0001	7844	63	10	13	19	6	15	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/1	t0002	7840	21	8	6	3	1	2	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0003	7844	16	9	5	0	1	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0004	7840	7	1	6	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0005	7841	5	5	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0006	7849	4	0	0	2	0	2	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0007	7844	4	4	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0008	7843	4	0	2	2	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0009	7837	4	4	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0010	7842	3	3	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0011	7840	3	0	2	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0012	7844	3	0	0	3	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0013	7844	3	0	2	0	0	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0014	7841	3	3	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0015	7844	3	0	1	2	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0016	7843	3	1	1	0	1	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0017	7840	3	3	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0018	7844	2	0	1	0	1	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0019	7841	2	2	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0020	7840	2	2	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0021	7861	2	2	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0022	7861	2	2	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0023	7841	2	2	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0024	7848	1	0	0	0	0	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0025	7844	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0026	7844	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0027	7845	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0028	7845	1	0	0	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0029	7845	1	0	1	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0030	7845	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0031	7844	1	0	0	0	0	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0032	7845	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0033	7840	1	0	0	0	0	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0034	7844	1	0	0	0	0	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0035	7844	1	0	0	0	0	1	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0036	7844	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0037	7844	1	0	0	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0038	7840	1	0	1	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0039	7844	1	0	1	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0040	7844	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0041	7844	1	0	1	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0042	7862	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0043	7840	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0044	7840	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0045	7839	1	0	1	0	0	0	copy fasta	CELF2	chr10	11012872	11341675