JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CELF2_chr10_11012872_11341675	0/0	t0046	7861	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0047	7861	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0048	7861	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	1/0	t0049	7841	1	0	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0050	7861	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0051	7837	1	1	0	0	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0052	7844	1	0	0	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF2_chr10_11012872_11341675	0/0	t0053	7844	1	0	0	1	0	0	copy fasta	CELF2	chr10	11012872	11341675
CELF3_chr1_151695058_151721803	0/1	t0001	4185	67	3	12	42	4	5	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0002	4185	66	2	12	28	5	19	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0003	4185	61	3	10	39	0	9	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0004	4185	47	4	6	29	3	5	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0005	4185	42	2	16	21	1	2	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0006	4185	32	28	4	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0007	4185	19	4	3	8	1	3	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0008	4185	8	8	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0009	4183	8	8	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0010	4185	8	0	1	7	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0011	4185	7	0	0	5	0	2	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0012	4185	7	7	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0013	4185	5	0	0	5	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0014	4185	4	4	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0015	4185	3	0	0	3	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0016	4185	3	0	0	0	0	3	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0017	4185	2	0	0	0	2	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0018	4185	2	0	0	2	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0019	4185	2	2	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0020	4185	2	2	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0021	4185	2	2	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0022	4180	2	2	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0023	4186	2	0	1	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0024	4185	2	0	0	2	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0025	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0026	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0027	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0028	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0029	4185	1	0	1	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	1/0	t0030	4185	1	0	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0031	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0032	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0033	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0034	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0035	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0036	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0037	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0038	4186	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0039	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0040	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0041	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0042	4180	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803