Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTS6_chr5_65143738_65486920	0/0	t0009	3956	1	0	0	1	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0010	3956	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0011	3956	1	0	1	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0012	3956	1	0	0	1	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0013	3956	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0014	3956	1	0	1	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0015	3956	1	0	1	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0016	3956	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS6_chr5_65143738_65486920	0/0	t0017	3956	1	1	0	0	0	0	copy fasta	ADAMTS6	chr5	65143738	65486920
ADAMTS7_chr15_78754206_78816464	1/0	t0001	460	260	56	32	151	3	17	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/1	t0002	460	47	7	16	5	6	12	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0003	460	34	4	7	12	3	8	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0004	460	15	13	2	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0005	460	11	1	7	0	0	3	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0006	460	3	0	0	3	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0007	460	3	3	0	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0008	460	2	0	0	2	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0009	460	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0010	460	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0011	460	1	1	0	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0012	460	1	1	0	0	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS7_chr15_78754206_78816464	0/0	t0013	460	1	0	0	1	0	0	copy fasta	ADAMTS7	chr15	78754206	78816464
ADAMTS8_chr11_130399923_130433609	0/0	t0001	959	144	9	36	81	9	9	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	1/1	t0002	959	133	41	18	51	6	15	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0003	959	40	19	4	8	0	9	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0004	959	37	5	1	27	0	4	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0005	959	22	2	2	17	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0006	959	18	2	8	7	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0007	959	10	7	3	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0008	959	9	7	2	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0009	959	3	0	1	0	1	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0010	959	2	2	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0011	959	1	0	1	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0012	959	1	0	0	1	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0013	959	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0014	959	1	0	0	0	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0015	959	1	0	0	0	0	1	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS8_chr11_130399923_130433609	0/0	t0016	959	1	1	0	0	0	0	copy fasta	ADAMTS8	chr11	130399923	130433609
ADAMTS9_chr3_64510654_64693000	1/1	t0001	1817	129	36	22	53	4	12	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0002	1817	75	23	5	43	1	3	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0003	1817	36	0	12	24	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0004	1817	10	0	2	7	0	1	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0005	1817	5	4	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0006	1817	4	4	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0007	1817	4	3	1	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0008	1817	3	3	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0009	1817	3	0	0	3	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0010	1817	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0011	1817	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000
ADAMTS9_chr3_64510654_64693000	0/0	t0012	1817	2	2	0	0	0	0	copy fasta	ADAMTS9	chr3	64510654	64693000