JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CELF3_chr1_151695058_151721803	0/0	t0043	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0044	4180	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0045	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0046	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0047	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0048	4180	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0049	4183	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0050	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0051	4185	1	1	0	0	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0052	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF3_chr1_151695058_151721803	0/0	t0053	4185	1	0	0	1	0	0	copy fasta	CELF3	chr1	151695058	151721803
CELF4_chr18_37238040_37570798	0/0	t0001	2365	43	5	12	13	2	11	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0002	2365	22	0	7	9	0	6	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/1	t0003	2363	11	2	4	0	1	3	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0004	2361	10	5	0	3	0	2	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0005	2367	10	1	3	4	1	1	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0006	2363	7	7	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0007	2365	7	7	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0008	2364	7	6	1	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0009	2361	6	6	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0010	2364	6	2	1	3	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0011	2368	5	4	1	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0012	2360	3	3	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0013	2363	3	0	0	3	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0014	2364	3	3	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0015	2360	3	3	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0016	2367	3	0	0	3	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0017	2361	2	1	0	1	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	1/0	t0018	2360	2	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0019	2362	2	2	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0020	2366	2	0	2	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0021	2364	2	1	0	1	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0022	2363	2	1	1	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0023	2367	2	1	1	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0024	2366	2	2	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0025	2365	2	2	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0026	2361	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0027	2361	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0028	2357	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0029	2359	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0030	2361	1	0	1	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0031	2360	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0032	2359	1	0	0	0	0	1	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0033	2366	1	0	0	1	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0034	2365	1	0	0	0	0	1	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0035	2361	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0036	2366	1	0	1	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0037	2367	1	0	0	0	0	1	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0038	2366	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0039	2366	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798