JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CELF4_chr18_37238040_37570798	0/0	t0040	2362	1	0	1	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0041	2367	1	0	0	1	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF4_chr18_37238040_37570798	0/0	t0042	2365	1	1	0	0	0	0	copy fasta	CELF4	chr18	37238040	37570798
CELF5_chr19_3219661_3302076	1/1	t0001	439	102	18	16	39	4	23	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0002	438	47	35	5	5	1	1	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0003	437	38	3	22	9	0	4	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0004	441	33	6	10	11	3	3	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0005	440	33	8	7	6	2	10	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0006	442	5	1	0	3	0	1	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0007	441	1	1	0	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0008	440	1	0	0	1	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0009	439	1	0	1	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF5_chr19_3219661_3302076	0/0	t0010	441	1	0	1	0	0	0	copy fasta	CELF5	chr19	3219661	3302076
CELF6_chr15_72279727_72325157	0/1	t0001	1928	139	17	32	66	6	17	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	1/0	t0002	1928	121	54	8	57	1	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0003	1928	14	6	8	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0004	1928	10	0	0	10	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0005	1928	9	9	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0006	1928	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0007	1928	1	1	0	0	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0008	1928	1	0	0	1	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0009	1928	1	0	0	0	0	1	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0010	1928	1	0	0	1	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0011	1928	1	0	0	1	0	0	copy fasta	CELF6	chr15	72279727	72325157
CELF6_chr15_72279727_72325157	0/0	t0012	1928	1	0	0	0	1	0	copy fasta	CELF6	chr15	72279727	72325157
CELSR1_chr22_46356174_46542620	1/0	t0001	2500	74	19	19	19	6	10	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/1	t0002	2500	12	6	4	0	1	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0003	2473	4	4	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0004	2500	2	2	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0005	2500	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0006	2500	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0007	2463	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0008	2473	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0009	2500	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0010	2500	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0011	2500	1	0	0	1	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0012	2500	1	0	0	0	0	1	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0013	2500	1	1	0	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0014	2500	1	0	1	0	0	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0015	2500	1	0	0	0	0	1	copy fasta	CELSR1	chr22	46356174	46542620
CELSR1_chr22_46356174_46542620	0/0	t0016	2500	1	0	0	0	1	0	copy fasta	CELSR1	chr22	46356174	46542620
CELSR2_chr1_109244539_109280751	0/1	t0001	2245	193	3	37	120	9	23	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0002	2245	31	28	1	0	2	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0003	2245	26	9	2	7	1	7	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	1/0	t0004	2244	14	13	0	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0005	2244	12	2	4	0	1	5	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0006	2245	10	0	5	0	4	1	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0007	2244	10	9	0	1	0	0	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0008	2240	9	1	6	0	0	2	copy fasta	CELSR2	chr1	109244539	109280751
CELSR2_chr1_109244539_109280751	0/0	t0009	2245	6	5	1	0	0	0	copy fasta	CELSR2	chr1	109244539	109280751