JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEND1_chr11_782115_795090	0/0	t0014	1156	2	0	0	2	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0015	1155	1	0	0	0	0	1	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0016	1156	1	0	0	0	0	1	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0017	1155	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0018	1155	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0019	1140	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0020	1155	1	1	0	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0021	1155	1	1	0	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0022	1156	1	0	1	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0023	1156	1	1	0	0	0	0	copy fasta	CEND1	chr11	782115	795090
CEND1_chr11_782115_795090	0/0	t0024	1155	1	0	0	1	0	0	copy fasta	CEND1	chr11	782115	795090
CENPA_chr2_26781056_26799589	0/0	t0001	967	368	89	70	160	14	35	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	1/0	t0002	967	6	0	2	0	2	1	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	t0003	967	1	0	0	1	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	t0004	967	1	0	0	1	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	t0005	967	1	0	0	0	0	1	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	t0006	967	1	0	0	0	0	1	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	t0007	967	1	0	1	0	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/1	t0008	967	1	0	0	0	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	t0009	967	1	0	1	0	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPA_chr2_26781056_26799589	0/0	t0010	967	1	1	0	0	0	0	copy fasta	CENPA	chr2	26781056	26799589
CENPB_chr20_3778851_3791740	1/1	t0001	1091	368	81	62	175	17	31	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0002	1092	9	2	1	5	0	1	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0003	1091	8	0	7	0	0	1	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0004	1102	5	0	1	0	1	3	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0005	1091	3	3	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0006	1091	3	0	3	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0007	1091	3	3	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0008	1091	2	2	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0009	1091	2	2	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0010	1091	1	0	0	0	0	1	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0011	1091	1	1	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0012	1091	1	1	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0013	1091	1	0	0	0	0	1	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0014	1091	1	1	0	0	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0015	1091	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPB_chr20_3778851_3791740	0/0	t0016	1091	1	0	0	1	0	0	copy fasta	CENPB	chr20	3778851	3791740
CENPC_chr4_67463762_67550503	0/1	t0001	4001	117	22	17	61	5	11	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0002	3991	49	7	10	27	3	2	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	1/0	t0003	3992	40	17	3	12	2	5	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0004	3999	36	8	19	2	6	1	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0005	4001	28	1	7	16	0	4	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0006	4002	8	1	3	3	1	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0007	3991	6	2	0	0	0	4	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0008	4000	5	4	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0009	4002	5	0	0	4	0	1	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0010	3992	4	4	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0011	3992	3	1	0	1	0	1	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0012	4000	3	3	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0013	4001	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503