JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPC_chr4_67463762_67550503	0/0	t0014	3991	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0015	3991	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0016	4001	2	0	0	2	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0017	4001	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0018	4001	2	2	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0019	4000	2	1	0	0	1	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0020	3992	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0021	4001	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0022	4002	1	0	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0023	3991	1	0	0	0	0	1	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0024	3991	1	0	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0025	4002	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0026	3991	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0027	4001	1	0	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0028	4001	1	0	0	0	0	1	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0029	4000	1	0	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0030	4001	1	0	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0031	4001	1	0	0	0	0	1	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0032	4001	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0033	4001	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0034	4001	1	0	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0035	4002	1	0	1	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0036	4002	1	0	1	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0037	4003	1	0	1	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0038	4001	1	1	0	0	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPC_chr4_67463762_67550503	0/0	t0039	4001	1	0	0	1	0	0	copy fasta	CENPC	chr4	67463762	67550503
CENPE_chr4_103100811_103203343	1/1	t0001	436	318	86	56	130	10	34	copy fasta	CENPE	chr4	103100811	103203343
CENPE_chr4_103100811_103203343	0/0	t0002	436	2	2	0	0	0	0	copy fasta	CENPE	chr4	103100811	103203343
CENPF_chr1_214598195_214669571	1/1	t0001	946	154	28	30	60	11	23	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0002	946	83	50	9	20	0	4	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0003	946	17	1	6	9	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0004	946	11	10	1	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0005	946	4	0	1	0	0	3	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0006	946	4	1	0	0	0	3	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0007	946	2	0	1	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0008	946	1	0	0	1	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0009	946	1	0	0	1	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0010	946	1	0	0	0	1	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0011	946	1	0	0	1	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0012	946	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0013	946	1	0	0	0	0	1	copy fasta	CENPF	chr1	214598195	214669571
CENPF_chr1_214598195_214669571	0/0	t0014	946	1	1	0	0	0	0	copy fasta	CENPF	chr1	214598195	214669571
CENPH_chr5_69184583_69215357	1/0	t0001	611	269	48	53	128	7	32	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	t0002	611	68	23	10	27	0	8	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/1	t0003	611	44	19	12	8	1	3	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	t0004	611	3	0	0	1	0	2	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	t0005	611	1	0	0	0	0	1	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	t0006	611	1	0	1	0	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	t0007	611	1	1	0	0	0	0	copy fasta	CENPH	chr5	69184583	69215357
CENPH_chr5_69184583_69215357	0/0	t0008	611	1	1	0	0	0	0	copy fasta	CENPH	chr5	69184583	69215357