JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPI_chrX_101093204_101171126	1/0	t0001	3314	92	6	15	58	2	10	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0002	3312	59	3	14	32	2	8	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/1	t0003	3313	49	14	13	13	4	4	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0004	3313	16	1	10	0	1	4	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0005	3313	10	10	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0006	3313	8	7	0	0	0	1	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0007	3313	6	6	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0008	3312	6	5	0	0	1	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0009	3312	4	0	0	4	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0010	3312	3	0	1	1	1	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0011	3313	3	3	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0012	3315	2	0	1	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0013	3314	2	0	0	2	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0014	3313	2	2	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0015	3308	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0016	3315	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0017	3314	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0018	3314	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0019	3313	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0020	3312	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0021	3314	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0022	3313	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0023	3312	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0024	3314	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0025	3313	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0026	3313	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0027	3312	1	0	0	1	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0028	3312	1	0	0	0	0	1	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0029	3312	1	0	1	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0030	3312	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0031	3312	1	0	1	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0032	3300	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0033	3314	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPI_chrX_101093204_101171126	0/0	t0034	3313	1	1	0	0	0	0	copy fasta	CENPI	chrX	101093204	101171126
CENPJ_chr13_24877279_24927861	0/0	t0001	1067	123	6	18	82	1	16	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/1	t0002	1065	78	22	15	20	6	14	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0003	1066	68	1	10	50	4	3	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0004	1063	43	5	16	12	3	7	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0005	1064	33	0	3	29	0	1	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0006	1066	25	22	3	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0007	1067	23	7	10	0	1	5	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	1/0	t0008	1066	17	6	0	10	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0009	1066	14	12	2	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0010	1066	6	5	1	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0011	1065	3	3	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0012	1066	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0013	1063	1	0	0	0	1	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0014	1063	1	1	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0015	1065	1	1	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0016	1065	1	1	0	0	0	0	copy fasta	CENPJ	chr13	24877279	24927861