JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPJ_chr13_24877279_24927861	0/0	t0017	1067	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPJ_chr13_24877279_24927861	0/0	t0018	1064	1	0	0	1	0	0	copy fasta	CENPJ	chr13	24877279	24927861
CENPK_chr5_65512766_65568168	1/0	t0001	922	208	60	42	81	9	15	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0002	915	67	1	18	28	6	14	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0003	922	45	13	9	19	0	4	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/1	t0004	922	42	14	4	16	0	7	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0005	922	4	0	1	0	3	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0006	922	2	2	0	0	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0007	915	2	1	1	0	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0008	922	1	1	0	0	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0009	922	1	0	0	0	0	1	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0010	922	1	0	1	0	0	0	copy fasta	CENPK	chr5	65512766	65568168
CENPK_chr5_65512766_65568168	0/0	t0011	922	1	0	0	0	0	1	copy fasta	CENPK	chr5	65512766	65568168
CENPL_chr1_173794550_173829883	1/1	t0001	1672	245	40	45	115	8	35	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0002	1672	57	3	1	46	2	5	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0003	1672	32	31	1	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0004	1672	8	7	1	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0005	1672	5	5	0	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0006	1672	3	1	2	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0007	1672	2	2	0	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0008	1672	1	1	0	0	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0009	1672	1	0	0	0	0	1	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0010	1672	1	0	0	0	0	1	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0011	1672	1	0	0	1	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0012	1672	1	0	0	1	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPL_chr1_173794550_173829883	0/0	t0013	1672	1	0	0	1	0	0	copy fasta	CENPL	chr1	173794550	173829883
CENPM_chr22_41933737_41952152	1/0	t0001	396	122	3	19	69	9	21	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/1	t0002	396	66	10	25	16	1	13	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	t0003	396	47	38	8	1	0	0	copy fasta	CENPM	chr22	41933737	41952152
CENPM_chr22_41933737_41952152	0/0	t0004	396	23	21	2	0	0	0	copy fasta	CENPM	chr22	41933737	41952152
CENPN_chr16_81002214_81036485	0/1	t0001	2909	110	9	28	45	6	21	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0002	2908	60	5	8	43	1	3	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0003	2908	46	1	3	39	0	3	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0004	2909	31	5	15	7	2	2	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0005	2909	19	0	0	19	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0006	2908	14	1	0	13	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0007	2909	10	6	3	0	1	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0008	2909	10	2	1	7	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0009	2908	9	8	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	1/0	t0010	2909	7	2	1	3	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0011	2909	7	7	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0012	2909	5	4	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0013	2910	5	5	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0014	2909	4	3	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0015	2909	4	0	0	4	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0016	2910	3	3	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0017	2909	3	0	0	3	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0018	2908	2	2	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0019	2908	2	0	0	2	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0020	2908	2	1	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485