JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPN_chr16_81002214_81036485	0/0	t0021	2908	2	0	1	0	0	1	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0022	2908	2	2	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0023	2909	2	2	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0024	2910	2	2	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0025	2908	2	0	0	1	0	1	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0026	2909	2	2	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0027	2909	2	0	0	2	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0028	2908	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0029	2908	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0030	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0031	2909	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0032	2910	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0033	2908	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0034	2908	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0035	2908	1	0	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0036	2909	1	0	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0037	2908	1	0	0	0	0	1	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0038	2908	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0039	2908	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0040	2908	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0041	2909	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0042	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0043	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0044	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0045	2909	1	0	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0046	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0047	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0048	2909	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0049	2909	1	0	0	0	0	1	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0050	2910	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0051	2909	1	0	0	0	0	1	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0052	2909	1	0	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0053	2909	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0054	2909	1	0	0	1	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0055	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0056	2909	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0057	2908	1	1	0	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPN_chr16_81002214_81036485	0/0	t0058	2909	1	0	1	0	0	0	copy fasta	CENPN	chr16	81002214	81036485
CENPO_chr2_24788425_24827376	0/1	t0001	3204	113	7	35	53	5	12	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	1/0	t0002	3204	48	29	8	2	3	5	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0003	3204	41	2	2	36	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0004	3203	34	6	2	23	1	2	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0005	3205	22	1	7	12	1	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0006	3204	22	2	1	17	1	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0007	3204	14	0	8	0	5	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0008	3204	12	3	4	5	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0009	3204	11	4	5	0	0	2	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0010	3203	7	7	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0011	3205	6	0	0	4	0	2	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0012	3204	4	3	1	0	0	0	copy fasta	CENPO	chr2	24788425	24827376