JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPO_chr2_24788425_24827376	0/0	t0013	3203	3	3	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0014	3204	3	0	0	3	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0015	3205	3	0	1	0	0	2	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0016	3203	3	0	0	3	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0017	3205	3	0	0	3	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0018	3203	2	1	1	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0019	3205	2	0	1	0	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0020	3204	2	2	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0021	3204	2	0	0	0	0	2	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0022	3203	2	0	0	2	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0023	3205	2	1	1	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0024	3205	2	0	1	0	1	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0025	3204	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0026	3204	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0027	3204	1	0	0	0	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0028	3204	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0029	3204	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0030	3204	1	0	0	0	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0031	3204	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0032	3204	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0033	3203	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0034	3204	1	0	0	0	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0035	3204	1	0	0	0	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0036	3204	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0037	3205	1	0	0	0	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0038	3204	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0039	3204	1	1	0	0	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0040	3203	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0041	3204	1	0	0	1	0	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0042	3203	1	0	0	0	1	0	copy fasta	CENPO	chr2	24788425	24827376
CENPO_chr2_24788425_24827376	0/0	t0043	3204	1	0	0	0	0	1	copy fasta	CENPO	chr2	24788425	24827376
CENPP_chr9_92320953_92625529	0/0	t0001	7427	72	12	21	21	10	8	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0002	7426	25	2	1	14	2	6	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0003	7427	24	0	0	24	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0004	7427	23	3	7	12	0	1	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0005	7427	18	0	3	11	1	3	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0006	7427	13	12	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0007	7427	9	4	1	0	0	4	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0008	7427	7	1	3	0	0	3	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0009	7427	6	0	1	5	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0010	7427	6	4	2	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0011	7427	5	5	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0012	7427	5	4	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0013	7426	4	0	2	0	1	1	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0014	7427	3	0	0	3	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0015	7412	3	3	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0016	7427	2	0	0	1	0	1	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0017	7427	2	0	1	0	0	1	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0018	7431	2	2	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0019	7427	2	1	0	0	0	1	copy fasta	CENPP	chr9	92320953	92625529