JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPP_chr9_92320953_92625529	0/0	t0020	7427	2	2	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0021	7427	1	0	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0022	7431	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0023	7426	1	0	0	1	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0024	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0025	7427	1	0	0	1	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0026	7427	1	0	0	0	1	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0027	7427	1	0	0	1	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0028	7431	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0029	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0030	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0031	7427	1	0	0	0	1	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0032	7427	1	0	0	1	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0033	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0034	7427	1	0	0	1	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0035	7427	1	0	0	0	0	1	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0036	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0037	7427	1	0	0	1	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0038	7427	1	0	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0039	7427	1	0	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0040	7427	1	0	0	0	0	1	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0041	7427	1	0	0	1	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0042	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0043	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0044	7431	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0045	7427	1	0	1	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0046	7427	1	0	0	0	0	1	copy fasta	CENPP	chr9	92320953	92625529
CENPP_chr9_92320953_92625529	0/0	t0047	7427	1	1	0	0	0	0	copy fasta	CENPP	chr9	92320953	92625529
CENPQ_chr6_49458370_49498107	0/1	t0001	934	105	0	26	63	7	8	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0002	935	98	34	11	38	5	10	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0003	934	86	11	12	47	2	14	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0004	934	57	30	10	12	0	5	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	1/0	t0005	935	8	7	0	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0006	934	2	2	0	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0007	935	2	2	0	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0008	935	1	1	0	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0009	935	1	0	1	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0010	934	1	0	0	0	0	1	copy fasta	CENPQ	chr6	49458370	49498107
CENPQ_chr6_49458370_49498107	0/0	t0011	935	1	1	0	0	0	0	copy fasta	CENPQ	chr6	49458370	49498107
CENPS_chr1_10425433_10447808	0/1	t0001	489	301	62	64	128	12	34	copy fasta	CENPS	chr1	10425433	10447808
CENPS_chr1_10425433_10447808	0/0	t0002	489	74	21	13	29	2	9	copy fasta	CENPS	chr1	10425433	10447808
CENPS_chr1_10425433_10447808	0/0	t0003	489	24	6	1	16	0	1	copy fasta	CENPS	chr1	10425433	10447808
CENPS_chr1_10425433_10447808	1/0	t0004	489	10	9	0	0	0	0	copy fasta	CENPS	chr1	10425433	10447808
CENPS_chr1_10425433_10447808	0/0	t0005	489	1	0	0	1	0	0	copy fasta	CENPS	chr1	10425433	10447808
CENPT_chr16_67823157_67852693	1/1	t0001	895	248	83	51	82	3	27	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0002	895	5	0	4	0	1	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0003	895	3	0	0	3	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0004	895	3	3	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0005	895	2	2	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0006	895	1	0	0	0	0	1	copy fasta	CENPT	chr16	67823157	67852693