JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPT_chr16_67823157_67852693	0/0	t0007	895	1	1	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0008	895	1	1	0	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0009	895	1	0	1	0	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPT_chr16_67823157_67852693	0/0	t0010	895	1	0	0	1	0	0	copy fasta	CENPT	chr16	67823157	67852693
CENPU_chr4_184689085_184739096	1/1	t0001	1238	150	39	23	61	8	17	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0002	1242	119	5	20	83	3	8	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0003	1229	23	19	4	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0004	1234	16	0	9	0	0	7	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0005	1238	11	3	6	0	1	1	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0006	1242	8	8	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0007	1242	7	5	1	1	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0008	1238	6	0	2	3	0	1	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0009	1234	5	5	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0010	1238	3	3	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0011	1242	2	0	0	2	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0012	1242	2	2	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0013	1238	2	0	0	2	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0014	1234	1	0	1	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0015	1238	1	1	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0016	1238	1	1	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPU_chr4_184689085_184739096	0/0	t0017	1238	1	1	0	0	0	0	copy fasta	CENPU	chr4	184689085	184739096
CENPVL1_chrX_51705512_51717131	0/0	t0001	802	233	60	45	95	8	25	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	t0002	802	2	1	1	0	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	t0003	802	1	0	0	0	0	1	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	t0004	801	1	0	0	1	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL1_chrX_51705512_51717131	0/0	t0005	802	1	1	0	0	0	0	copy fasta	CENPVL1	chrX	51705512	51717131
CENPVL2_chrX_51676212_51687831	0/0	t0001	802	230	54	45	101	8	22	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	t0002	802	4	3	1	0	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	t0003	802	2	0	0	2	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL2_chrX_51676212_51687831	0/0	t0004	802	1	0	1	0	0	0	copy fasta	CENPVL2	chrX	51676212	51687831
CENPVL3_chrX_51612020_51623912	0/0	t0001	1075	232	41	37	120	8	26	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0002	1075	27	8	6	10	1	2	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	1/1	t0003	1075	19	6	8	1	0	2	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0004	1075	6	6	0	0	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0005	1075	5	5	0	0	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0006	1076	1	0	0	1	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0007	1077	1	0	0	1	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0008	1073	1	1	0	0	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0009	1074	1	0	0	1	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0010	1075	1	0	0	1	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0011	1075	1	0	0	1	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0012	1075	1	1	0	0	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0013	1073	1	0	1	0	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPVL3_chrX_51612020_51623912	0/0	t0014	1075	1	1	0	0	0	0	copy fasta	CENPVL3	chrX	51612020	51623912
CENPV_chr17_16337537_16358469	1/1	t0001	314	301	69	49	148	5	28	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	t0002	314	52	7	26	0	7	12	copy fasta	CENPV	chr17	16337537	16358469
CENPV_chr17_16337537_16358469	0/0	t0003	314	3	2	1	0	0	0	copy fasta	CENPV	chr17	16337537	16358469
CENPW_chr6_126335115_126353875	1/1	t0001	543	283	91	51	97	9	33	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	t0002	543	3	0	1	1	0	1	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	t0003	543	2	0	0	2	0	0	copy fasta	CENPW	chr6	126335115	126353875