JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CENPW_chr6_126335115_126353875	0/0	t0004	543	1	1	0	0	0	0	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	t0005	543	1	1	0	0	0	0	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	t0006	543	1	1	0	0	0	0	copy fasta	CENPW	chr6	126335115	126353875
CENPW_chr6_126335115_126353875	0/0	t0007	543	1	0	0	0	1	0	copy fasta	CENPW	chr6	126335115	126353875
CENPX_chr17_82013703_82027878	1/1	t0001	520	358	73	70	163	14	36	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	t0002	520	24	8	6	4	2	4	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	t0003	520	9	9	0	0	0	0	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	t0004	519	5	4	1	0	0	0	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	t0005	519	3	0	0	3	0	0	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	t0006	520	1	0	1	0	0	0	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	t0007	520	1	0	0	1	0	0	copy fasta	CENPX	chr17	82013703	82027878
CENPX_chr17_82013703_82027878	0/0	t0008	520	1	0	0	1	0	0	copy fasta	CENPX	chr17	82013703	82027878
CEP104_chr1_3807086_3862211	0/0	t0001	3654	125	6	36	60	5	18	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0002	3656	86	2	12	58	1	13	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0003	3656	42	23	11	0	1	7	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/1	t0004	3656	27	10	8	0	2	6	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0005	3656	16	0	2	14	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0006	3657	10	10	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0007	3656	9	9	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0008	3652	9	5	1	3	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0009	3656	9	8	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0010	3656	7	0	2	2	3	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0011	3654	3	0	0	3	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0012	3656	3	0	0	1	0	2	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0013	3656	2	2	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0014	3656	2	1	1	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0015	3658	2	2	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0016	3656	2	2	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0017	3655	2	0	0	2	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0018	3656	2	0	0	2	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0019	3656	2	0	0	2	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0020	3658	2	0	2	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0021	3656	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0022	3654	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0023	3654	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0024	3654	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0025	3654	1	0	1	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0026	3656	1	0	0	0	1	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0027	3657	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0028	3656	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0029	3656	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0030	3656	1	0	1	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	1/0	t0031	3654	1	0	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0032	3656	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0033	3655	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0034	3656	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0035	3656	1	0	1	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0036	3656	1	0	0	0	1	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0037	3656	1	0	0	0	0	1	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0038	3656	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211