JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP104_chr1_3807086_3862211	0/0	t0039	3656	1	1	0	0	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP104_chr1_3807086_3862211	0/0	t0040	3656	1	0	0	1	0	0	copy fasta	CEP104	chr1	3807086	3862211
CEP112_chr17_65630537_66197133	1/1	t0001	580	101	41	18	15	6	19	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	t0002	580	4	3	0	1	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	t0003	580	2	2	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	t0004	580	1	0	1	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	t0005	580	1	1	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	t0006	610	1	0	1	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	t0007	580	1	1	0	0	0	0	copy fasta	CEP112	chr17	65630537	66197133
CEP112_chr17_65630537_66197133	0/0	t0008	580	1	0	0	0	0	1	copy fasta	CEP112	chr17	65630537	66197133
CEP120_chr5_123339892_123428403	0/0	t0001	2033	156	27	23	88	3	15	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	1/1	t0002	2033	103	31	13	42	3	12	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0003	2033	55	23	10	14	2	6	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0004	2033	21	0	6	15	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0005	2033	21	6	13	0	2	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0006	2033	5	0	2	0	2	1	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0007	2033	3	2	1	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0008	2033	2	2	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0009	2033	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0010	2033	1	0	0	1	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0011	2033	1	0	0	0	0	1	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0012	2033	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0013	2033	1	1	0	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0014	2033	1	0	1	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0015	2033	1	0	1	0	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0016	2033	1	0	0	0	0	1	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0017	2033	1	0	0	1	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP120_chr5_123339892_123428403	0/0	t0018	2033	1	0	0	1	0	0	copy fasta	CEP120	chr5	123339892	123428403
CEP126_chr11_101910010_102006062	0/0	t0001	3705	64	13	13	26	3	9	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0002	3704	63	5	14	37	2	5	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0003	3703	31	0	5	20	0	6	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0004	3705	25	7	5	9	1	3	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0005	3706	23	10	3	9	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0006	3694	21	2	9	1	2	7	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0007	3704	10	0	0	9	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0008	3694	6	3	2	0	1	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0009	3703	6	4	2	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0010	3702	5	2	0	0	0	3	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0011	3703	4	2	0	1	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0012	3705	3	3	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0013	3700	3	3	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0014	3706	3	0	0	3	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0015	3693	2	1	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0016	3700	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0017	3705	2	0	1	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0018	3704	2	1	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0019	3706	2	0	0	2	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0020	3704	2	1	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0021	3702	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0022	3706	2	1	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062