JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP126_chr11_101910010_102006062	0/0	t0023	3706	2	1	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0024	3704	2	0	0	2	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0025	3705	2	0	0	2	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0026	3704	2	0	0	2	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0027	3704	2	0	0	2	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0028	3703	2	0	0	1	1	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0029	3705	2	0	0	2	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0030	3694	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0031	3706	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0032	3705	2	2	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0033	3694	2	0	0	0	1	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0034	3694	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0035	3705	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0036	3709	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0037	3708	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0038	3702	1	0	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0039	3704	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0040	3692	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0041	3705	1	0	0	0	1	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0042	3707	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0043	3706	1	0	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0044	3682	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0045	3704	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0046	3705	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0047	3706	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0048	3705	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0049	3696	1	0	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0050	3695	1	0	0	0	0	1	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0051	3703	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0052	3703	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0053	3703	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0054	3707	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0055	3706	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0056	3704	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0057	3704	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0058	3701	1	0	1	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0059	3695	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0060	3705	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0061	3705	1	0	0	1	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0062	3706	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0063	3704	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP126_chr11_101910010_102006062	0/0	t0064	3708	1	1	0	0	0	0	copy fasta	CEP126	chr11	101910010	102006062
CEP128_chr14_80491479_80946738	0/0	t0001	1332	35	12	7	8	1	7	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0002	1332	30	5	7	18	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/1	t0003	1332	26	8	4	5	1	7	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0004	1330	25	13	4	3	0	5	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	1/0	t0005	1330	23	18	1	3	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0006	1330	14	4	3	5	0	2	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0007	1329	2	0	0	1	0	1	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0008	1332	2	2	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738