JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP128_chr14_80491479_80946738	0/0	t0009	1332	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0010	1330	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0011	1332	1	0	1	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0012	1329	1	0	1	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0013	1332	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0014	1332	1	1	0	0	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP128_chr14_80491479_80946738	0/0	t0015	1332	1	0	0	1	0	0	copy fasta	CEP128	chr14	80491479	80946738
CEP131_chr17_81184596_81227965	1/1	t0001	388	224	32	32	119	9	30	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0002	388	114	37	28	35	5	9	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0003	388	25	24	1	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0004	388	6	0	0	0	0	6	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0005	388	5	0	1	0	3	1	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0006	388	4	2	2	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0007	388	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0008	388	1	0	1	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0009	388	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0010	388	1	0	0	0	1	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0011	388	1	0	1	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP131_chr17_81184596_81227965	0/0	t0012	388	1	1	0	0	0	0	copy fasta	CEP131	chr17	81184596	81227965
CEP135_chr4_55943945_56038361	1/0	t0001	2174	89	17	12	50	3	6	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0002	2183	79	3	11	52	3	10	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0003	2175	59	8	18	22	4	7	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0004	2183	33	8	10	12	1	2	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/1	t0005	2174	24	8	5	1	3	6	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0006	2173	13	3	4	3	2	1	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0007	2177	5	5	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0008	2178	5	5	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0009	2176	4	2	1	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0010	2185	4	2	1	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0011	2181	4	2	2	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0012	2176	4	3	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0013	2181	3	2	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0014	2181	2	2	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0015	2177	2	1	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0016	2174	1	0	0	0	0	1	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0017	2175	1	0	0	0	0	1	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0018	2174	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0019	2183	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0020	2173	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0021	2184	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0022	2184	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0023	2173	1	0	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0024	2185	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0025	2185	1	0	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0026	2174	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0027	2183	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0028	2174	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0029	2174	1	0	0	1	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0030	2174	1	0	1	0	0	0	copy fasta	CEP135	chr4	55943945	56038361
CEP135_chr4_55943945_56038361	0/0	t0031	2173	1	1	0	0	0	0	copy fasta	CEP135	chr4	55943945	56038361