JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP152_chr15_48732938_48816069	1/1	t0001	428	235	65	32	103	12	21	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	t0002	428	89	9	10	58	1	11	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	t0003	428	9	0	4	0	0	5	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	t0004	428	5	2	2	0	1	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	t0005	428	2	2	0	0	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	t0006	428	1	0	0	0	0	1	copy fasta	CEP152	chr15	48732938	48816069
CEP152_chr15_48732938_48816069	0/0	t0007	428	1	0	0	1	0	0	copy fasta	CEP152	chr15	48732938	48816069
CEP162_chr6_84119250_84232643	1/1	t0001	944	119	13	36	40	4	24	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0002	944	57	51	4	0	1	1	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0003	944	15	1	9	0	0	5	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0004	944	10	10	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0005	944	5	5	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0006	944	2	0	1	0	1	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0007	944	2	1	1	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0008	944	1	0	0	1	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0009	944	1	0	0	1	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0010	944	1	1	0	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP162_chr6_84119250_84232643	0/0	t0011	944	1	0	1	0	0	0	copy fasta	CEP162	chr6	84119250	84232643
CEP164_chr11_117322854_117418266	0/0	t0001	1247	81	24	17	27	4	9	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0002	1247	78	5	18	43	4	8	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0003	1247	73	14	6	46	2	5	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0004	1247	57	13	14	20	2	8	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	1/1	t0005	1247	50	9	8	22	1	8	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0006	1247	9	0	0	5	0	4	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0007	1247	7	7	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0008	1247	5	2	0	0	2	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0009	1247	5	3	2	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0010	1247	3	0	0	3	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0011	1248	3	0	0	1	1	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0012	1247	3	3	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0013	1247	3	3	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0014	1248	2	2	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0015	1247	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0016	1247	1	0	0	0	0	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0017	1247	1	0	0	1	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0018	1247	1	0	0	0	0	1	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0019	1247	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0020	1248	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0021	1247	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0022	1247	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0023	1247	1	0	1	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0024	1247	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP164_chr11_117322854_117418266	0/0	t0025	1247	1	1	0	0	0	0	copy fasta	CEP164	chr11	117322854	117418266
CEP170B_chr14_104860268_104901747	0/0	t0001	2064	124	36	21	53	3	11	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/1	t0002	2064	122	21	48	21	6	25	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0003	2068	24	22	2	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0004	2064	21	0	2	19	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0005	2064	8	0	1	1	0	6	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0006	2064	4	4	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0007	2064	3	0	1	2	0	0	copy fasta	CEP170B	chr14	104860268	104901747