JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP170B_chr14_104860268_104901747	0/0	t0008	2064	3	3	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0009	2064	1	0	0	1	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0010	2064	1	0	0	1	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0011	2064	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0012	2064	1	0	1	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0013	2064	1	0	0	1	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0014	2064	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0015	2064	1	0	0	0	0	1	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0016	2064	1	0	0	1	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0017	2064	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0018	2064	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0019	2064	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0020	2064	1	0	0	0	1	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0021	2064	1	0	0	0	0	1	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0022	2064	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	1/0	t0023	2063	1	0	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0024	2064	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0025	2064	1	0	0	1	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0026	2068	1	1	0	0	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170B_chr14_104860268_104901747	0/0	t0027	2064	1	0	0	1	0	0	copy fasta	CEP170B	chr14	104860268	104901747
CEP170_chr1_243119428_243260281	0/1	t0001	2305	230	57	56	77	10	29	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0002	2306	42	9	6	26	0	1	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0003	2306	18	17	1	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0004	2304	4	0	2	0	2	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0005	2305	2	2	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0006	2305	1	0	1	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0007	2305	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0008	2305	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0009	2305	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0010	2306	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0011	2306	1	0	0	1	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP170_chr1_243119428_243260281	0/0	t0012	2305	1	1	0	0	0	0	copy fasta	CEP170	chr1	243119428	243260281
CEP192_chr18_12986362_13130036	0/0	t0001	347	286	62	35	151	10	28	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	1/1	t0002	347	101	29	25	25	6	14	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	t0003	347	3	3	0	0	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	t0004	347	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP192_chr18_12986362_13130036	0/0	t0005	347	1	0	0	1	0	0	copy fasta	CEP192	chr18	12986362	13130036
CEP19_chr3_196701277_196717250	1/0	t0001	1667	126	18	27	64	5	11	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0002	1668	106	11	8	70	1	16	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0003	1664	49	14	11	13	2	9	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0004	1661	45	5	18	19	3	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/1	t0005	1666	43	16	13	2	3	8	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0006	1664	15	12	1	0	1	1	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0007	1669	8	1	0	7	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0008	1666	6	6	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0009	1666	5	5	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0010	1667	4	4	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0011	1668	3	0	0	2	0	1	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0012	1668	2	0	0	2	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0013	1667	2	2	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250