JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP19_chr3_196701277_196717250	0/0	t0014	1664	2	0	0	0	2	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0015	1667	1	0	1	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0016	1667	1	0	0	1	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0017	1668	1	0	0	1	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0018	1667	1	0	0	1	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0019	1666	1	1	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0020	1665	1	1	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0021	1693	1	1	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0022	1667	1	0	0	1	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0023	1667	1	0	0	0	1	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0024	1667	1	0	0	1	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0025	1667	1	0	1	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0026	1667	1	0	1	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0027	1667	1	0	0	1	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0028	1666	1	0	1	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0029	1661	1	0	0	1	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP19_chr3_196701277_196717250	0/0	t0030	1665	1	1	0	0	0	0	copy fasta	CEP19	chr3	196701277	196717250
CEP20_chr16_15860719_15893603	0/1	t0001	1740	156	29	20	92	3	11	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0002	1740	82	19	9	42	0	12	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0003	1735	64	4	23	14	8	15	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0004	1740	63	0	9	48	3	3	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0005	1740	18	12	3	0	2	1	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0006	1740	16	14	2	0	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0007	1735	12	0	12	0	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0008	1740	4	4	0	0	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0009	1740	3	2	1	0	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0010	1740	3	0	0	3	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0011	1740	3	3	0	0	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0012	1740	1	1	0	0	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0013	1740	1	0	0	1	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0014	1740	1	0	0	1	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0015	1740	1	0	0	1	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0016	1740	1	0	0	0	0	1	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0017	1740	1	0	0	1	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0018	1777	1	0	1	0	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0019	1735	1	0	0	0	0	1	copy fasta	CEP20	chr16	15860719	15893603
CEP20_chr16_15860719_15893603	0/0	t0020	1740	1	0	0	1	0	0	copy fasta	CEP20	chr16	15860719	15893603
CEP250_chr20_35450598_35524280	0/1	t0001	8105	72	21	15	25	5	5	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0002	8107	38	14	8	11	2	3	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0003	8107	17	6	4	0	1	6	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0004	8106	13	0	1	11	0	1	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0005	8107	9	1	0	4	0	4	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0006	8106	7	0	5	0	0	2	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0007	8108	7	7	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0008	8106	7	0	1	0	0	6	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0009	8106	6	0	0	6	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0010	8108	5	5	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0011	8110	5	3	2	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0012	8106	4	0	0	0	0	4	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0013	8105	4	0	2	0	0	2	copy fasta	CEP250	chr20	35450598	35524280