JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP250_chr20_35450598_35524280	0/0	t0064	8107	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0065	8110	1	1	0	0	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0066	8104	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0067	8104	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP250_chr20_35450598_35524280	0/0	t0068	8104	1	0	0	1	0	0	copy fasta	CEP250	chr20	35450598	35524280
CEP290_chr12_88044016_88147088	1/1	t0001	385	219	75	36	74	4	28	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	t0002	381	13	10	3	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	t0003	385	1	0	1	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP290_chr12_88044016_88147088	0/0	t0004	381	1	1	0	0	0	0	copy fasta	CEP290	chr12	88044016	88147088
CEP295NL_chr17_78885579_78908201	1/0	t0001	226	262	44	45	139	6	27	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/1	t0002	226	159	50	29	53	10	16	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	t0003	226	3	3	0	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	t0004	226	3	0	1	0	0	2	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	t0005	226	2	1	1	0	0	0	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295NL_chr17_78885579_78908201	0/0	t0006	226	1	0	0	0	0	1	copy fasta	CEP295NL	chr17	78885579	78908201
CEP295_chr11_93656682_93735358	1/1	t0001	209	350	83	51	168	14	32	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	t0002	209	2	1	1	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	t0003	209	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP295_chr11_93656682_93735358	0/0	t0004	209	1	1	0	0	0	0	copy fasta	CEP295	chr11	93656682	93735358
CEP350_chr1_179949810_180119875	0/1	t0001	4062	91	14	20	45	4	7	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	1/0	t0002	4061	87	33	4	39	1	9	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0003	4061	20	14	1	0	2	3	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0004	4059	16	8	4	4	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0005	4061	7	1	6	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0006	4060	5	0	4	0	0	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0007	4061	5	4	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0008	4061	3	3	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0009	4061	2	2	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0010	4061	2	2	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0011	4060	1	0	0	0	1	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0012	4062	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0013	4062	1	0	0	0	0	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0014	4062	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0015	4060	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0016	4061	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0017	4062	1	0	1	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0018	4062	1	0	0	0	0	1	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0019	4061	1	1	0	0	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP350_chr1_179949810_180119875	0/0	t0020	4059	1	0	0	1	0	0	copy fasta	CEP350	chr1	179949810	180119875
CEP41_chr7_130388771_130446016	0/0	t0001	5171	46	2	15	24	1	4	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0002	5173	39	11	10	15	1	2	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	1/0	t0003	5171	25	12	3	4	3	2	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0004	5171	19	0	3	10	0	6	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0005	5172	12	0	2	10	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0006	5172	11	10	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0007	5172	11	1	2	4	0	4	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0008	5173	11	3	3	3	0	2	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0009	5172	10	0	3	0	4	3	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0010	5171	10	0	2	7	0	1	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0011	5172	8	0	3	3	1	1	copy fasta	CEP41	chr7	130388771	130446016