JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP41_chr7_130388771_130446016	0/0	t0012	5172	7	3	2	2	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0013	5168	6	0	1	5	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0014	5172	6	0	0	6	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0015	5174	5	1	1	3	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0016	5173	5	2	3	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0017	5171	5	0	2	3	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0018	5172	5	0	1	1	0	3	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0019	5171	4	4	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0020	5171	4	0	0	4	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0021	5174	4	0	1	3	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0022	5172	3	3	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0023	5173	3	3	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0024	5171	3	2	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0025	5170	3	1	0	1	1	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0026	5172	3	2	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0027	5171	3	0	0	3	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0028	5171	3	0	0	3	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0029	5171	2	2	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0030	5173	2	0	1	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0031	5170	2	2	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0032	5172	2	0	0	2	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0033	5173	2	0	2	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0034	5173	2	1	0	0	0	1	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0035	5172	2	0	1	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0036	5172	2	2	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0037	5172	2	0	0	0	0	2	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0038	5171	2	0	0	0	0	2	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0039	5172	2	0	0	1	0	1	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0040	5172	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0041	5173	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0042	5173	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0043	5174	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0044	5174	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0045	5173	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0046	5172	1	0	0	0	0	1	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0047	5173	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0048	5173	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0049	5173	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0050	5173	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0051	5170	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0052	5172	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0053	5171	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0054	5172	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0055	5172	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0056	5172	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0057	5171	1	0	0	0	0	1	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0058	5171	1	0	0	0	1	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0059	5172	1	0	0	0	1	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0060	5171	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0061	5171	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016