JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP41_chr7_130388771_130446016	0/0	t0062	5161	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0063	5172	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/1	t0064	5171	1	0	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0065	5170	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0066	5174	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0067	5174	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0068	5173	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0069	5173	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0070	5173	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0071	5172	1	0	0	0	1	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0072	5171	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0073	5171	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0074	5171	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0075	5171	1	0	0	0	0	1	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0076	5171	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0077	5171	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0078	5172	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0079	5171	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0080	5172	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0081	5170	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0082	5170	1	0	0	0	0	1	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0083	5170	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0084	5172	1	0	1	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0085	5173	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0086	5171	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0087	5171	1	1	0	0	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0088	5171	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP41_chr7_130388771_130446016	0/0	t0089	5214	1	0	0	1	0	0	copy fasta	CEP41	chr7	130388771	130446016
CEP43_chr6_166994397_167057718	0/0	t0001	12779	21	0	0	16	1	4	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0002	12769	18	4	3	9	0	2	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0003	12771	14	0	2	8	2	2	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0004	12779	9	0	0	9	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0005	12770	6	3	2	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0006	12765	6	0	2	2	2	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0007	12756	5	3	1	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0008	12770	5	0	0	5	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0009	12758	5	5	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0010	12774	5	0	0	5	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0011	12777	5	0	4	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0012	12781	5	0	3	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0013	12777	5	0	0	2	1	2	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0014	12775	5	0	1	4	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0015	12764	4	0	0	4	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0016	12783	4	0	0	4	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0017	12768	4	1	0	2	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	1/0	t0018	12757	3	0	2	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0019	12770	3	3	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0020	12775	3	2	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0021	12779	3	0	0	3	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0022	12773	3	0	3	0	0	0	copy fasta	CEP43	chr6	166994397	167057718