JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP43_chr6_166994397_167057718	0/0	t0023	12769	3	0	0	3	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0024	12767	3	0	1	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0025	12769	3	0	0	3	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0026	12776	2	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0027	12758	2	0	0	0	1	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0028	12757	2	2	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0029	12751	2	2	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0030	12776	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0031	12774	2	0	0	1	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0032	12776	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0033	12774	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0034	12774	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0035	12768	2	0	1	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0036	12766	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0037	12781	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0038	12779	2	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0039	12777	2	2	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0040	12777	2	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0041	12774	2	2	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0042	12757	2	2	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0043	12782	2	0	0	0	2	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0044	12779	2	0	0	0	2	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0045	12774	2	0	1	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0046	12770	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/1	t0047	12759	2	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0048	12783	2	0	1	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0049	12783	2	0	1	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0050	12781	2	2	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0051	12777	2	2	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0052	12775	2	0	1	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0053	12771	2	0	2	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0054	12793	2	0	2	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0055	12777	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0056	12780	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0057	12777	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0058	12776	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0059	12773	2	0	0	2	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0060	12762	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0061	12756	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0062	12758	1	0	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0063	12759	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0064	12763	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0065	12757	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0066	12757	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0067	12758	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0068	12776	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0069	12774	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0070	12772	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0071	12770	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0072	12770	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718