JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
CEP43_chr6_166994397_167057718	0/0	t0073	12766	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0074	12778	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0075	12777	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0076	12775	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0077	12770	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0078	12770	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0079	12771	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0080	12774	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0081	12757	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0082	12760	1	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0083	12759	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0084	12751	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0085	12777	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0086	12774	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0087	12776	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0088	12768	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0089	12779	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0090	12760	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0091	12769	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0092	12766	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0093	12769	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0094	12765	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0095	12764	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0096	12767	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0097	12766	1	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0098	12759	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0099	12758	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0100	12764	1	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0101	12765	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0102	12767	1	0	0	1	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0103	12767	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0104	12773	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0105	12781	1	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0106	12779	1	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0107	12785	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0108	12781	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0109	12782	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0110	12779	1	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0111	12779	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0112	12777	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0113	12776	1	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0114	12776	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0115	12775	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0116	12777	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0117	12773	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0118	12771	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0119	12771	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0120	12771	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0121	12765	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0122	12774	1	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718