JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP43_chr6_166994397_167057718	0/0	t0173	12766	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0174	12766	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0175	12765	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0176	12777	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0177	12771	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0178	12765	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0179	12773	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0180	12779	1	0	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0181	12782	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0182	12793	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0183	12789	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0184	12787	1	0	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0185	12785	1	0	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0186	12785	1	1	0	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0187	12781	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0188	12782	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0189	12779	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0190	12779	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0191	12778	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0192	12777	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0193	12777	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0194	12773	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0195	12772	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0196	12788	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0197	12794	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0198	12785	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0199	12783	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0200	12782	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0201	12781	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0202	12780	1	0	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0203	12780	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0204	12779	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0205	12780	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0206	12777	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0207	12777	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0208	12776	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0209	12767	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0210	12777	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0211	12782	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0212	12781	1	0	1	0	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0213	12780	1	0	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0214	12777	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0215	12779	1	0	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0216	12779	1	0	0	1	0	0	copy fasta	CEP43	chr6	166994397	167057718
CEP43_chr6_166994397_167057718	0/0	t0217	12783	1	0	0	0	0	1	copy fasta	CEP43	chr6	166994397	167057718
CEP44_chr4_174278911_174325328	0/0	t0001	3126	120	14	20	75	2	9	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	1/1	t0002	3126	108	28	11	55	3	9	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0003	3119	33	2	15	2	6	8	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0004	3123	31	5	0	23	1	2	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0005	3123	29	13	9	2	0	5	copy fasta	CEP44	chr4	174278911	174325328