JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP44_chr4_174278911_174325328	0/0	t0006	3123	12	11	1	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0007	3131	10	0	10	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0008	3126	5	0	0	5	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0009	3123	5	0	2	0	1	2	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0010	3122	4	4	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0011	3126	3	0	3	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0012	3123	3	3	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0013	3123	3	2	1	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0014	3126	2	0	0	2	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0015	3119	2	0	2	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0016	3126	2	0	0	2	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0017	3123	2	2	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0018	3126	1	0	0	1	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0019	3123	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0020	3119	1	0	0	0	1	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0021	3123	1	0	0	0	0	1	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0022	3123	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0023	3123	1	0	1	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0024	3119	1	0	1	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0025	3123	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0026	3126	1	0	0	0	0	1	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0027	3126	1	0	0	1	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0028	3126	1	1	0	0	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0029	3126	1	0	0	1	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0030	3123	1	0	0	0	0	1	copy fasta	CEP44	chr4	174278911	174325328
CEP44_chr4_174278911_174325328	0/0	t0031	3126	1	0	0	1	0	0	copy fasta	CEP44	chr4	174278911	174325328
CEP55_chr10_93491612_93534092	0/1	t0001	1263	186	26	52	74	7	26	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	1/0	t0002	1264	171	42	19	91	5	13	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0003	1264	11	10	1	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0004	1263	5	5	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0005	1263	5	5	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0006	1264	4	4	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0007	1264	1	0	0	1	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0008	1264	1	1	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0009	1263	1	1	0	0	0	0	copy fasta	CEP55	chr10	93491612	93534092
CEP55_chr10_93491612_93534092	0/0	t0010	1263	1	0	0	0	0	1	copy fasta	CEP55	chr10	93491612	93534092
CEP57L1_chr6_109090507_109179418	0/0	t0001	11520	48	17	5	17	1	8	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0002	11520	25	1	7	16	1	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0003	11510	15	1	4	5	1	4	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0004	11520	8	0	1	7	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/1	t0005	11520	8	1	5	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0006	11519	8	4	1	0	0	3	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0007	11521	5	3	1	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0008	11519	5	5	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0009	11520	4	4	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0010	11520	4	0	3	1	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0011	11520	4	4	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0012	11526	3	3	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0013	11519	2	0	0	0	1	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0014	11520	2	2	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418