Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADAMTSL5_chr19_1500022_1518019	0/0	t0017	1268	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0018	1269	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0019	1268	1	0	0	0	0	1	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0020	1269	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0021	1268	1	0	0	0	0	1	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0022	1268	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0023	1268	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0024	1268	1	0	0	0	0	1	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0025	1269	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0026	1269	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0027	1268	1	0	0	0	0	1	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0028	1268	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0029	1269	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0030	1268	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0031	1269	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0032	1268	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0033	1268	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0034	1268	1	0	1	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0035	1269	1	0	0	1	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0036	1268	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0037	1268	1	0	0	0	1	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAMTSL5_chr19_1500022_1518019	0/0	t0038	1268	1	1	0	0	0	0	copy fasta	ADAMTSL5	chr19	1500022	1518019
ADAP1_chr7_892900_959680	1/1	t0001	1225	11	2	3	0	0	4	copy fasta	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	t0002	1225	1	1	0	0	0	0	copy fasta	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	t0003	1168	1	0	1	0	0	0	copy fasta	ADAP1	chr7	892900	959680
ADAP1_chr7_892900_959680	0/0	t0004	1225	1	1	0	0	0	0	copy fasta	ADAP1	chr7	892900	959680
ADAP2_chr17_30916945_30964322	1/1	t0001	1524	194	20	61	67	14	30	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0002	1525	47	41	6	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0003	1526	8	6	2	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0004	1524	6	6	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0005	1524	4	4	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0006	1525	3	1	0	1	0	1	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0007	1523	2	2	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0008	1524	2	0	0	0	1	1	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0009	1523	2	1	1	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0010	1524	2	2	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0011	1523	2	2	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0012	1524	2	0	2	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0013	1524	1	0	0	1	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0014	1525	1	0	0	0	0	1	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0015	1559	1	0	0	0	1	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0016	1524	1	0	0	0	0	1	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0017	1524	1	1	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0018	1524	1	0	0	1	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0019	1524	1	1	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADAP2_chr17_30916945_30964322	0/0	t0020	1525	1	1	0	0	0	0	copy fasta	ADAP2	chr17	30916945	30964322
ADARB1_chr21_45069580_45231560	0/0	t0001	5835	58	5	13	31	2	7	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0002	5914	45	12	9	19	0	5	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/1	t0003	5914	30	1	3	18	1	6	copy fasta	ADARB1	chr21	45069580	45231560
ADARB1_chr21_45069580_45231560	0/0	t0004	5878	13	0	3	9	0	1	copy fasta	ADARB1	chr21	45069580	45231560