JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP57L1_chr6_109090507_109179418	0/0	t0065	11520	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0066	11504	1	0	0	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0067	11523	1	0	0	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0068	11506	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0069	11518	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0070	11510	1	0	0	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0071	11512	1	0	0	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0072	11511	1	0	0	0	1	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0073	11511	1	0	1	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0074	11507	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0075	11507	1	0	1	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0076	11506	1	0	1	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0077	11493	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0078	11494	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0079	11493	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0080	11493	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0081	11497	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0082	11510	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0083	11520	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0084	11504	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0085	11492	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0086	11505	1	0	1	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0087	11519	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0088	11520	1	1	0	0	0	0	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57L1_chr6_109090507_109179418	0/0	t0089	11521	1	0	0	0	0	1	copy fasta	CEP57L1	chr6	109090507	109179418
CEP57_chr11_95785498_95837693	1/0	t0001	1639	127	12	26	64	10	14	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0002	1638	87	9	14	53	5	6	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0003	1639	61	38	11	8	1	3	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0004	1639	22	21	1	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0005	1639	21	3	3	14	0	1	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0006	1639	7	0	0	1	0	6	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0007	1639	6	0	1	0	0	5	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0008	1639	3	3	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0009	1639	2	2	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/1	t0010	1638	1	0	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0011	1639	1	1	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0012	1639	1	1	0	0	0	0	copy fasta	CEP57	chr11	95785498	95837693
CEP57_chr11_95785498_95837693	0/0	t0013	1639	1	0	0	0	0	1	copy fasta	CEP57	chr11	95785498	95837693
CEP63_chr3_134481057_134570031	0/1	t0001	3668	135	38	24	51	7	14	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0002	3668	57	18	10	24	1	4	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0003	3668	45	0	8	25	3	9	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0004	3668	25	0	0	17	1	7	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0005	3668	9	0	0	8	0	1	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0006	3668	8	2	4	0	2	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0007	3669	5	4	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0008	3668	4	0	2	0	0	2	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0009	3668	4	3	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0010	3668	3	3	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0011	3668	3	3	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0012	3668	3	2	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031