JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP63_chr3_134481057_134570031	1/0	t0013	3668	3	2	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0014	3668	2	1	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0015	3668	2	1	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0016	3668	1	0	0	0	0	1	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0017	3668	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0018	3668	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0019	3668	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0020	3668	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0021	3668	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0022	3668	1	0	0	1	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0023	3668	1	0	0	1	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0024	3669	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0025	3669	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0026	3683	1	0	0	1	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0027	3668	1	0	1	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0028	3668	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP63_chr3_134481057_134570031	0/0	t0029	3668	1	1	0	0	0	0	copy fasta	CEP63	chr3	134481057	134570031
CEP68_chr2_65051416_65092004	0/0	t0001	3533	147	23	27	81	4	12	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0002	3531	55	0	8	45	0	2	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/1	t0003	3530	39	1	10	19	4	4	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0004	3530	16	15	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	1/0	t0005	3530	16	10	4	0	0	1	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0006	3532	9	4	1	1	0	3	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0007	3533	9	9	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0008	3531	8	8	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0009	3532	7	4	1	2	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0010	3533	6	0	1	0	0	5	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0011	3530	4	4	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0012	3530	4	4	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0013	3530	4	4	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0014	3530	3	0	1	0	2	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0015	3529	2	0	0	0	0	2	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0016	3533	2	0	0	0	0	2	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0017	3533	2	0	2	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0018	3530	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0019	3533	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0020	3533	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0021	3530	1	0	0	0	0	1	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0022	3530	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0023	3530	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0024	3533	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0025	3532	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0026	3532	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0027	3531	1	1	0	0	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0028	3531	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0029	3530	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0030	3530	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0031	3530	1	0	0	0	0	1	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0032	3530	1	0	0	1	0	0	copy fasta	CEP68	chr2	65051416	65092004
CEP68_chr2_65051416_65092004	0/0	t0033	3533	1	0	1	0	0	0	copy fasta	CEP68	chr2	65051416	65092004