JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP85L_chr6_118455772_118656591	0/0	t0012	4957	2	0	0	2	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0013	4956	2	2	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0014	4957	2	2	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0015	4957	2	0	0	2	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0016	4957	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	1/0	t0017	4956	1	0	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0018	4957	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0019	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0020	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0021	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0022	4957	1	0	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0023	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0024	4957	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0025	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0026	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0027	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0028	4957	1	1	0	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0029	4957	1	0	0	0	0	1	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0030	4957	1	0	0	1	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85L_chr6_118455772_118656591	0/0	t0031	4957	1	0	1	0	0	0	copy fasta	CEP85L	chr6	118455772	118656591
CEP85_chr1_26229200_26283808	0/0	t0001	1649	119	27	29	43	9	11	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	1/0	t0002	1649	85	10	4	60	0	10	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/1	t0003	1649	79	29	13	27	1	8	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0004	1651	25	12	2	1	4	6	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0005	1649	19	0	15	4	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0006	1651	4	0	2	0	2	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0007	1649	4	0	0	4	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0008	1649	3	2	1	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0009	1649	1	0	0	0	0	1	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0010	1649	1	0	0	1	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0011	1649	1	1	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP85_chr1_26229200_26283808	0/0	t0012	1649	1	1	0	0	0	0	copy fasta	CEP85	chr1	26229200	26283808
CEP89_chr19_32870925_32976958	1/0	t0001	3322	118	13	18	76	2	8	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0002	3323	78	19	9	40	3	7	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/1	t0003	3323	56	12	11	20	3	9	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0004	3323	20	1	2	13	1	3	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0005	3323	20	2	8	0	4	6	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0006	3322	12	12	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0007	3322	11	1	0	7	0	3	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0008	3323	9	0	0	9	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0009	3322	8	0	2	2	1	3	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0010	3322	5	5	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0011	3322	5	5	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0012	3322	4	4	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0013	3322	3	0	2	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0014	3323	2	2	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0015	3323	2	0	1	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0016	3322	2	0	1	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0017	3324	2	0	0	1	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0018	3323	2	0	0	2	0	0	copy fasta	CEP89	chr19	32870925	32976958