JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP89_chr19_32870925_32976958	0/0	t0019	3321	2	0	0	0	0	2	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0020	3322	2	0	1	0	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0021	3321	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0022	3323	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0023	3322	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0024	3322	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0025	3322	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0026	3322	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0027	3323	1	0	0	0	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0028	3322	1	0	0	0	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0029	3322	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0030	3322	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0031	3322	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0032	3323	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0033	3322	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0034	3323	1	0	0	0	0	1	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0035	3323	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0036	3323	1	0	0	1	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0037	3323	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0038	3323	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0039	3323	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0040	3324	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0041	3321	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0042	3323	1	0	1	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP89_chr19_32870925_32976958	0/0	t0043	3322	1	1	0	0	0	0	copy fasta	CEP89	chr19	32870925	32976958
CEP95_chr17_64501977_64542946	1/1	t0001	289	137	13	27	62	5	28	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	t0002	289	108	72	15	12	3	6	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	t0003	289	2	0	2	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP95_chr17_64501977_64542946	0/0	t0004	289	1	1	0	0	0	0	copy fasta	CEP95	chr17	64501977	64542946
CEP97_chr3_101719614_101775562	0/0	t0001	5075	140	25	26	70	2	17	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0002	5075	103	20	19	54	3	7	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0003	5075	22	8	9	0	4	1	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0004	5077	20	4	3	7	3	3	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0005	5075	12	1	0	11	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0006	5077	7	5	0	2	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0007	5079	6	6	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0008	5075	5	0	1	2	0	2	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	1/0	t0009	5075	5	4	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0010	5079	3	3	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0011	5076	3	1	0	2	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0012	5075	3	0	0	3	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0013	5079	2	2	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0014	5078	2	0	0	2	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0015	5075	2	2	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0016	5075	1	0	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0017	5077	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0018	5077	1	0	0	0	0	1	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/1	t0019	5075	1	0	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0020	5075	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0021	5075	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562