JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CEP97_chr3_101719614_101775562	0/0	t0022	5075	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0023	5075	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0024	5075	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0025	5075	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0026	5075	1	0	1	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0027	5075	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0028	5076	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0029	5075	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0030	5075	1	0	0	1	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0031	5075	1	1	0	0	0	0	copy fasta	CEP97	chr3	101719614	101775562
CEP97_chr3_101719614_101775562	0/0	t0032	5075	1	0	0	0	0	1	copy fasta	CEP97	chr3	101719614	101775562
CEPT1_chr1_111135223_111190104	1/1	t0001	953	279	62	45	134	5	31	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0002	954	90	14	19	41	3	13	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0003	952	15	3	3	6	2	1	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0004	953	7	0	2	0	2	3	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0005	953	6	5	1	0	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0006	954	6	6	0	0	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0007	953	4	3	1	0	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0008	953	1	0	1	0	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0009	952	1	1	0	0	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CEPT1_chr1_111135223_111190104	0/0	t0010	954	1	0	0	1	0	0	copy fasta	CEPT1	chr1	111135223	111190104
CER1_chr9_14714724_14727733	1/1	t0001	428	421	91	82	188	15	43	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	t0002	428	19	2	0	17	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	t0003	428	14	0	6	4	1	3	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	t0004	428	3	0	0	3	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	t0005	428	1	1	0	0	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	t0006	428	1	1	0	0	0	0	copy fasta	CER1	chr9	14714724	14727733
CER1_chr9_14714724_14727733	0/0	t0007	428	1	1	0	0	0	0	copy fasta	CER1	chr9	14714724	14727733
CERCAM_chr9_128415857_128442347	1/1	t0001	521	255	51	54	108	8	32	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	t0002	521	143	43	17	66	6	11	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	t0003	521	1	0	1	0	0	0	copy fasta	CERCAM	chr9	128415857	128442347
CERCAM_chr9_128415857_128442347	0/0	t0004	521	1	0	0	0	0	1	copy fasta	CERCAM	chr9	128415857	128442347
CERKL_chr2_181531672_181662105	0/1	t0001	1612	80	32	14	23	1	9	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0002	1612	75	10	9	39	4	13	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0003	1612	47	6	10	23	4	4	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0004	1611	45	1	14	29	0	1	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0005	1612	7	7	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0006	1612	5	0	0	5	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0007	1612	4	3	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0008	1611	4	4	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0009	1624	4	0	0	4	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0010	1612	3	0	0	3	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0011	1611	3	0	0	1	2	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0012	1582	3	0	0	3	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0013	1612	2	2	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	1/0	t0014	1612	2	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0015	1651	2	0	1	0	1	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0016	1611	1	0	0	1	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0017	1596	1	0	0	1	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0018	1612	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105