JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CERKL_chr2_181531672_181662105	0/0	t0019	1612	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0020	1612	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0021	1612	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0022	1612	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0023	1611	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0024	1622	1	0	0	0	0	1	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0025	1590	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0026	1600	1	0	1	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERKL_chr2_181531672_181662105	0/0	t0027	1612	1	1	0	0	0	0	copy fasta	CERKL	chr2	181531672	181662105
CERK_chr22_46679410_46743252	0/0	t0001	2836	48	0	7	35	0	6	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0002	2829	38	2	9	24	1	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/1	t0003	2837	23	5	5	3	3	6	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0004	2833	18	0	2	16	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0005	2833	16	0	7	5	0	4	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0006	2830	16	9	3	1	1	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0007	2826	16	0	1	15	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0008	2836	13	11	2	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	1/0	t0009	2829	13	0	2	4	0	6	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0010	2823	11	1	8	0	2	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0011	2829	10	6	1	0	1	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0012	2826	10	3	2	2	2	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0013	2830	9	5	1	1	0	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0014	2826	6	5	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0015	2823	5	1	2	0	1	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0016	2831	5	5	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0017	2830	5	0	4	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0018	2829	5	3	2	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0019	2836	4	0	0	4	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0020	2838	4	4	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0021	2836	3	3	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0022	2823	3	0	1	0	2	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0023	2833	3	1	2	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0024	2837	3	0	1	0	0	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0025	2837	3	0	1	0	0	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0026	2829	3	3	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0027	2826	3	3	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0028	2837	2	0	0	0	0	2	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0029	2826	2	2	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0030	2830	2	2	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0031	2826	2	2	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0032	2825	2	2	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0033	2830	2	2	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0034	2826	2	0	0	2	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0035	2833	1	0	0	0	1	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0036	2836	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0037	2836	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0038	2837	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0039	2823	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0040	2836	1	0	0	0	1	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0041	2837	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252