JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CERK_chr22_46679410_46743252	0/0	t0042	2836	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0043	2833	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0044	2823	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0045	2832	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0046	2823	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0047	2837	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0048	2836	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0049	2836	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0050	2829	1	0	0	0	1	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0051	2829	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0052	2816	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0053	2829	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0054	2829	1	0	0	1	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0055	2829	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0056	2829	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0057	2829	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0058	2816	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0059	2830	1	0	0	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0060	2826	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0061	2830	1	0	1	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0062	2826	1	1	0	0	0	0	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0063	2829	1	0	0	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERK_chr22_46679410_46743252	0/0	t0064	2826	1	0	0	0	0	1	copy fasta	CERK	chr22	46679410	46743252
CERS1_chr19_18863545_18901158	0/0	t0001	1527	261	84	31	102	10	34	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/1	t0002	1527	78	1	26	38	3	9	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0003	1530	22	3	1	16	1	1	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0004	1527	7	0	0	7	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0005	1527	2	2	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0006	1530	2	0	2	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0007	1527	1	0	0	1	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	1/0	t0008	1527	1	0	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0009	1527	1	1	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0010	1527	1	1	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0011	1512	1	0	0	1	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0012	1527	1	1	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0013	1527	1	1	0	0	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS1_chr19_18863545_18901158	0/0	t0014	1527	1	0	0	1	0	0	copy fasta	CERS1	chr19	18863545	18901158
CERS2_chr1_150960186_150979835	0/0	t0001	1180	150	36	29	62	7	16	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/1	t0002	1177	128	4	40	66	5	12	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0003	1180	39	0	2	30	3	4	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0004	1177	16	15	1	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0005	1180	11	10	0	0	0	1	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0006	1180	10	10	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0007	1180	6	6	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	1/0	t0008	1180	5	4	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0009	1180	4	4	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0010	1180	2	0	0	2	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0011	1177	2	0	0	1	0	1	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0012	1180	1	0	0	1	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0013	1180	1	0	0	1	0	0	copy fasta	CERS2	chr1	150960186	150979835