JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CERS2_chr1_150960186_150979835	0/0	t0014	1177	1	0	1	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0015	1177	1	0	0	1	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0016	1190	1	1	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0017	1180	1	1	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0018	1180	1	1	0	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0019	1180	1	0	0	0	1	0	copy fasta	CERS2	chr1	150960186	150979835
CERS2_chr1_150960186_150979835	0/0	t0020	1180	1	0	1	0	0	0	copy fasta	CERS2	chr1	150960186	150979835
CERS3_chr15_100395395_100533950	0/0	t0001	2547	136	21	26	74	4	11	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/1	t0002	2547	105	17	20	48	3	16	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0003	2547	13	0	0	6	0	7	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0004	2547	12	6	2	1	1	2	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0005	2555	10	0	6	4	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0006	2547	9	7	2	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0007	2553	8	0	1	6	0	1	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0008	2547	7	7	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0009	2551	5	4	1	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0010	2547	5	0	3	0	1	1	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0011	2555	4	0	2	1	0	1	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0012	2553	4	4	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0013	2547	3	0	1	2	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0014	2547	3	2	1	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	1/0	t0015	2547	3	2	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0016	2555	3	0	0	3	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0017	2547	2	2	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0018	2547	2	0	0	2	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0019	2547	2	0	0	2	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0020	2547	2	0	0	1	1	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0021	2547	2	2	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0022	2553	2	1	1	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0023	2582	1	0	0	0	0	1	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0024	2547	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0025	2547	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0026	2547	1	0	0	1	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0027	2547	1	0	0	1	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0028	2547	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0029	2547	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0030	2547	1	0	1	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0031	2547	1	0	0	1	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0032	2551	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0033	2551	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0034	2551	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0035	2551	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0036	2551	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0037	2553	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0038	2547	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0039	2547	1	0	1	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0040	2547	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0041	2551	1	1	0	0	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS3_chr15_100395395_100533950	0/0	t0042	2555	1	0	0	1	0	0	copy fasta	CERS3	chr15	100395395	100533950
CERS4_chr19_8204370_8267421	0/1	t0001	595	86	36	10	28	2	9	copy fasta	CERS4	chr19	8204370	8267421