JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CERS4_chr19_8204370_8267421	0/0	t0002	595	85	10	14	46	2	13	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0003	595	76	16	11	32	4	13	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	1/0	t0004	595	51	11	3	31	1	4	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0005	595	37	0	20	11	4	2	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0006	595	32	0	8	20	2	2	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0007	595	18	8	5	3	0	2	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0008	595	16	7	4	2	0	3	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0009	595	5	4	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0010	595	4	3	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0011	595	2	0	0	2	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0012	595	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0013	595	1	0	0	1	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0014	595	1	0	0	0	1	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0015	595	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0016	595	1	0	1	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS4_chr19_8204370_8267421	0/0	t0017	595	1	1	0	0	0	0	copy fasta	CERS4	chr19	8204370	8267421
CERS5_chr12_50124289_50172369	0/0	t0001	1326	102	22	9	58	2	11	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/1	t0002	1324	88	22	20	28	3	14	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	1/0	t0003	1329	61	5	18	19	6	12	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0004	1327	20	10	2	6	1	1	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0005	1324	10	9	1	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0006	1324	7	7	0	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0007	1326	7	0	2	5	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0008	1324	5	5	0	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0009	1325	4	2	2	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0010	1326	4	4	0	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0011	1325	3	1	0	1	0	1	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0012	1328	2	0	0	0	2	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0013	1326	2	0	0	2	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0014	1327	1	0	0	0	0	1	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0015	1325	1	1	0	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0016	1325	1	1	0	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0017	1330	1	0	0	1	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS5_chr12_50124289_50172369	0/0	t0018	1327	1	1	0	0	0	0	copy fasta	CERS5	chr12	50124289	50172369
CERS6_chr2_168451272_168780134	0/1	t0001	5650	30	3	6	16	1	3	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0002	5650	28	7	0	19	0	2	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	1/0	t0003	5650	15	6	2	2	0	4	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0004	5650	13	6	4	3	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0005	5650	12	2	3	6	0	1	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0006	5650	8	8	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0007	5651	8	8	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0008	5648	8	7	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0009	5650	7	7	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0010	5650	7	7	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0011	5649	7	6	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0012	5651	3	3	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0013	5650	2	1	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0014	5651	2	2	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0015	5650	2	2	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0016	5648	2	0	1	0	0	1	copy fasta	CERS6	chr2	168451272	168780134