JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CERS6_chr2_168451272_168780134	0/0	t0017	5653	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0018	5653	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0019	5653	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0020	5652	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0021	5650	1	0	0	0	0	1	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0022	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0023	5650	1	0	0	1	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0024	5651	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0025	5650	1	0	0	0	1	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0026	5650	1	0	0	1	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0027	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0028	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0029	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0030	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0031	5650	1	0	0	1	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0032	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0033	5650	1	0	1	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0034	5650	1	0	0	1	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0035	5650	1	0	0	1	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0036	5650	1	0	0	1	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0037	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERS6_chr2_168451272_168780134	0/0	t0038	5650	1	1	0	0	0	0	copy fasta	CERS6	chr2	168451272	168780134
CERT1_chr5_75372775_75516629	0/0	t0001	1994	118	26	15	56	2	19	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	1/1	t0002	1994	115	8	20	69	5	11	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0003	1994	34	28	6	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0004	1994	12	1	2	8	0	1	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0005	1994	11	8	3	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0006	1994	8	8	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0007	1994	6	0	2	4	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0008	1994	6	2	2	0	1	1	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0009	1994	6	0	0	6	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0010	1994	3	1	1	1	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0011	1994	3	0	0	3	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0012	1994	2	2	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0013	1994	2	2	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0014	1994	2	1	1	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0015	1994	1	0	1	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0016	1994	1	0	1	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0017	1994	1	0	0	0	0	1	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0018	1994	1	1	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0019	1994	1	1	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0020	1994	1	1	0	0	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0021	1994	1	0	0	1	0	0	copy fasta	CERT1	chr5	75372775	75516629
CERT1_chr5_75372775_75516629	0/0	t0022	1994	1	0	0	0	0	1	copy fasta	CERT1	chr5	75372775	75516629
CES1_chr16_55797851_55838096	1/0	t0001	240	65	9	10	30	4	11	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	t0002	240	15	1	1	10	0	3	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	t0003	240	4	3	1	0	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	t0004	240	1	0	0	1	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	t0005	240	1	0	0	1	0	0	copy fasta	CES1	chr16	55797851	55838096
CES1_chr16_55797851_55838096	0/0	t0006	240	1	1	0	0	0	0	copy fasta	CES1	chr16	55797851	55838096