JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CES2_chr16_66930516_66950096	1/1	t0001	1192	203	23	37	107	8	26	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0002	1197	50	38	4	6	1	1	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0003	1196	44	2	7	35	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0004	1196	21	19	0	0	0	2	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0005	1192	12	4	1	0	0	7	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0006	1191	10	0	0	7	1	2	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0007	1198	6	6	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0008	1197	6	0	0	5	0	1	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0009	1192	3	0	0	3	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0010	1197	3	3	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0011	1197	3	0	0	3	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0012	1196	3	0	3	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0013	1195	2	0	0	2	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0014	1197	1	1	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0015	1197	1	1	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0016	1196	1	0	1	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0017	1196	1	1	0	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0018	1192	1	0	0	1	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0019	1191	1	0	0	0	0	1	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0020	1191	1	0	0	1	0	0	copy fasta	CES2	chr16	66930516	66950096
CES2_chr16_66930516_66950096	0/0	t0021	1195	1	0	1	0	0	0	copy fasta	CES2	chr16	66930516	66950096
CES3_chr16_66956266_66980149	1/1	t0001	2143	240	74	39	86	14	25	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0002	2143	48	1	10	35	0	2	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0003	2143	11	10	0	0	0	1	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0004	2143	10	4	1	0	0	5	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0005	2143	3	0	0	3	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0006	2143	2	0	0	2	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0007	2143	2	0	2	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0008	2143	2	1	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0009	2143	2	0	0	2	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0010	2143	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0011	2143	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0012	2143	1	0	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0013	2143	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0014	2143	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0015	2143	1	1	0	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0016	2143	1	0	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0017	2143	1	0	0	0	0	1	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0018	2143	1	0	0	1	0	0	copy fasta	CES3	chr16	66956266	66980149
CES3_chr16_66956266_66980149	0/0	t0019	2143	1	0	1	0	0	0	copy fasta	CES3	chr16	66956266	66980149
CES4A_chr16_66983589_67015417	1/1	t0001	1460	276	73	50	108	9	34	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0002	1460	11	11	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0003	1461	6	4	0	0	0	2	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0004	1460	3	1	1	1	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0005	1460	2	2	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0006	1460	2	2	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0007	1460	1	0	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0008	1460	1	0	0	0	1	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0009	1460	1	0	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0010	1460	1	1	0	0	0	0	copy fasta	CES4A	chr16	66983589	67015417