JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CES4A_chr16_66983589_67015417	0/0	t0011	1460	1	0	0	1	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES4A_chr16_66983589_67015417	0/0	t0012	1460	1	0	1	0	0	0	copy fasta	CES4A	chr16	66983589	67015417
CES5A_chr16_55841154_55880373	0/0	t0001	450	136	31	28	57	3	17	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/1	t0002	450	93	26	4	46	3	13	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0003	450	70	16	22	24	4	4	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0004	450	58	12	13	16	6	11	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0005	450	48	4	11	30	1	2	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0006	450	24	4	0	19	0	1	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0007	450	12	0	0	12	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0008	450	3	3	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0009	450	1	0	0	0	1	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0010	450	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0011	450	1	1	0	0	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0012	450	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CES5A_chr16_55841154_55880373	0/0	t0013	450	1	0	0	1	0	0	copy fasta	CES5A	chr16	55841154	55880373
CETN1_chr18_575380_587114	1/1	t0001	1217	177	25	27	104	9	10	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0002	1218	64	11	18	21	5	9	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0003	1218	46	0	2	38	2	4	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0004	1217	30	9	4	8	0	9	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0005	1217	21	5	10	1	0	5	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0006	1218	18	2	1	14	0	1	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0007	1218	11	10	1	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0008	1218	10	10	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0009	1218	8	2	5	0	0	1	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0010	1217	7	7	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0011	1218	5	5	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0012	1218	4	2	2	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0013	1217	4	4	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0014	1218	3	2	1	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0015	1218	2	2	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0016	1217	1	1	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0017	1217	1	0	1	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0018	1218	1	0	0	0	0	1	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0019	1217	1	1	0	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0020	1217	1	0	0	0	0	1	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0021	1217	1	0	0	0	0	1	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0022	1217	1	0	1	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0023	1217	1	0	1	0	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0024	1217	1	0	0	1	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0025	1218	1	0	0	1	0	0	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0026	1251	1	0	0	0	0	1	copy fasta	CETN1	chr18	575380	587114
CETN1_chr18_575380_587114	0/0	t0027	1217	1	0	0	0	0	1	copy fasta	CETN1	chr18	575380	587114
CETN2_chrX_152821994_152835757	1/1	t0001	895	231	32	47	116	9	25	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	t0002	895	41	30	1	9	0	1	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	t0003	895	38	6	3	23	0	6	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	t0004	895	5	5	0	0	0	0	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	t0005	895	3	2	1	0	0	0	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	t0006	896	1	0	0	1	0	0	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	t0007	895	1	1	0	0	0	0	copy fasta	CETN2	chrX	152821994	152835757
CETN2_chrX_152821994_152835757	0/0	t0008	897	1	0	0	1	0	0	copy fasta	CETN2	chrX	152821994	152835757