JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CETN3_chr5_90387257_90414756	1/0	t0001	1903	304	58	64	130	14	37	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0002	1903	15	14	1	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0003	1903	5	5	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0004	1903	5	4	1	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0005	1903	4	4	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0006	1903	4	4	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0007	1903	2	0	0	1	0	1	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0008	1903	1	0	1	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0009	1903	1	1	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0010	1903	1	1	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0011	1903	1	0	1	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0012	1903	1	1	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0013	1903	1	0	0	1	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0014	1903	1	1	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/1	t0015	1903	1	0	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETN3_chr5_90387257_90414756	0/0	t0016	1903	1	1	0	0	0	0	copy fasta	CETN3	chr5	90387257	90414756
CETP_chr16_56956950_56988845	1/1	t0001	210	404	82	75	190	14	41	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	t0002	210	57	15	7	24	2	9	copy fasta	CETP	chr16	56956950	56988845
CETP_chr16_56956950_56988845	0/0	t0003	210	1	1	0	0	0	0	copy fasta	CETP	chr16	56956950	56988845
CFAP100_chr3_126389909_126441556	1/1	t0001	282	405	86	76	182	14	45	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	t0002	282	14	8	3	0	2	1	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	t0003	282	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	t0004	282	1	0	1	0	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP100_chr3_126389909_126441556	0/0	t0005	282	1	0	0	1	0	0	copy fasta	CFAP100	chr3	126389909	126441556
CFAP107_chr1_12741200_12768699	0/0	t0001	2981	85	32	19	23	2	9	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	1/0	t0002	2980	69	1	18	35	3	11	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0003	3195	59	6	13	31	3	6	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0004	2981	14	9	1	1	0	3	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0005	2982	13	0	0	13	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0006	2981	13	2	1	8	0	2	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0007	2982	9	0	0	9	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0008	2981	7	6	1	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/1	t0009	3195	6	0	2	0	1	2	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0010	2980	5	5	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0011	2982	5	5	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0012	2982	4	3	1	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0013	2982	4	1	0	0	2	1	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0014	2981	3	3	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0015	2981	3	0	1	0	2	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0016	2981	2	0	2	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0017	2981	2	0	0	0	0	2	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0018	2981	2	1	0	0	1	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0019	2980	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0020	2981	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0021	2981	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0022	3407	1	0	1	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0023	3407	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0024	2981	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0025	2981	1	0	0	1	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0026	3194	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699