JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP107_chr1_12741200_12768699	0/0	t0027	2981	1	0	0	0	1	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0028	2981	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0029	2980	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0030	2982	1	0	0	0	0	1	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0031	2981	1	0	0	0	1	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0032	2981	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0033	2981	1	0	0	0	0	1	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0034	2981	1	0	0	1	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0035	3193	1	0	0	0	0	1	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0036	3193	1	0	0	1	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0037	2980	1	0	0	0	1	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0038	2980	1	0	0	1	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0039	2981	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0040	2980	1	0	0	0	0	1	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0041	2982	1	0	0	0	1	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0042	3195	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0043	3407	1	0	0	1	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0044	3193	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0045	2981	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0046	2981	1	0	0	1	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0047	2982	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0048	2982	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP107_chr1_12741200_12768699	0/0	t0049	2749	1	1	0	0	0	0	copy fasta	CFAP107	chr1	12741200	12768699
CFAP119_chr16_30752423_30767062	1/1	t0001	368	259	75	61	81	15	25	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	t0002	368	3	3	0	0	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	t0003	368	3	0	1	0	1	1	copy fasta	CFAP119	chr16	30752423	30767062
CFAP119_chr16_30752423_30767062	0/0	t0004	368	1	0	0	1	0	0	copy fasta	CFAP119	chr16	30752423	30767062
CFAP126_chr1_161359733_161372876	1/1	t0001	241	244	56	50	90	16	30	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	t0002	241	60	5	1	46	0	8	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	t0003	241	21	3	4	12	0	2	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	t0004	241	16	13	3	0	0	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	t0005	240	6	6	0	0	0	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP126_chr1_161359733_161372876	0/0	t0006	241	3	3	0	0	0	0	copy fasta	CFAP126	chr1	161359733	161372876
CFAP141_chr1_154194085_154211333	1/1	t0001	369	369	93	70	150	14	40	copy fasta	CFAP141	chr1	154194085	154211333
CFAP141_chr1_154194085_154211333	0/0	t0002	369	3	3	0	0	0	0	copy fasta	CFAP141	chr1	154194085	154211333
CFAP144_chr1_43142904_43161396	1/1	t0001	132	396	98	82	150	16	48	copy fasta	CFAP144	chr1	43142904	43161396
CFAP157_chr9_127701988_127721002	1/0	t0001	2142	166	38	33	70	9	15	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/1	t0002	2142	142	34	33	39	5	30	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0003	2142	7	0	3	4	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0004	2142	5	5	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0005	2142	4	0	0	4	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0006	2142	4	4	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0007	2142	3	0	0	3	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0008	2142	2	0	0	2	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0009	2142	2	0	2	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0010	2142	2	2	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0011	2142	2	0	1	0	0	1	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0012	2142	2	0	0	2	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0013	2142	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0014	2142	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002