JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP157_chr9_127701988_127721002	0/0	t0015	2142	1	0	1	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0016	2142	1	1	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0017	2142	1	1	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0018	2142	1	1	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0019	2142	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0020	2142	1	0	1	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0021	2142	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0022	2142	1	1	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0023	2142	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0024	2142	1	0	0	1	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP157_chr9_127701988_127721002	0/0	t0025	2142	1	1	0	0	0	0	copy fasta	CFAP157	chr9	127701988	127721002
CFAP161_chr15_81129270_81154179	1/1	t0001	707	405	64	71	214	8	46	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	t0002	707	28	26	2	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	t0003	707	6	5	1	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	t0004	707	3	2	1	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	t0005	707	3	0	3	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	t0006	707	2	2	0	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP161_chr15_81129270_81154179	0/0	t0007	707	1	1	0	0	0	0	copy fasta	CFAP161	chr15	81129270	81154179
CFAP206_chr6_87402972_87469465	0/1	t0001	339	250	61	47	106	13	22	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	t0002	339	112	13	28	54	5	12	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	t0003	339	9	9	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	0/0	t0004	339	4	3	1	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP206_chr6_87402972_87469465	1/0	t0005	339	1	0	0	0	0	0	copy fasta	CFAP206	chr6	87402972	87469465
CFAP20DC_chr3_58737008_59055025	1/1	t0001	847	146	65	28	40	7	4	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	t0002	847	52	5	9	34	0	4	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	t0003	847	3	0	0	0	1	2	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	t0004	858	2	0	0	2	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20DC_chr3_58737008_59055025	0/0	t0005	847	1	0	1	0	0	0	copy fasta	CFAP20DC	chr3	58737008	59055025
CFAP20_chr16_58108592_58134381	1/1	t0001	700	345	84	66	147	11	35	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0002	700	26	1	3	20	0	2	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0003	699	6	1	0	5	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0004	699	6	0	0	6	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0005	699	6	0	0	0	0	6	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0006	697	4	0	0	3	1	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0007	700	2	0	0	2	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0008	700	1	0	0	1	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0009	700	1	0	1	0	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0010	700	1	1	0	0	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0011	699	1	0	0	0	0	1	copy fasta	CFAP20	chr16	58108592	58134381
CFAP20_chr16_58108592_58134381	0/0	t0012	699	1	1	0	0	0	0	copy fasta	CFAP20	chr16	58108592	58134381
CFAP210_chr2_169640425_169699405	1/0	t0001	495	266	54	30	147	9	25	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	t0002	495	97	36	13	29	5	14	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/1	t0003	495	26	1	11	10	0	3	copy fasta	CFAP210	chr2	169640425	169699405
CFAP210_chr2_169640425_169699405	0/0	t0004	495	1	1	0	0	0	0	copy fasta	CFAP210	chr2	169640425	169699405
CFAP221_chr2_119539449_119661661	0/1	t0001	301	124	38	23	47	1	14	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	1/0	t0002	301	97	34	19	36	1	6	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	t0003	301	2	2	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	t0004	301	1	0	0	1	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	t0005	301	1	1	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661
CFAP221_chr2_119539449_119661661	0/0	t0006	285	1	1	0	0	0	0	copy fasta	CFAP221	chr2	119539449	119661661