JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP251_chr12_121913592_122008919	1/1	t0001	280	352	74	67	152	14	43	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	t0002	280	1	0	1	0	0	0	copy fasta	CFAP251	chr12	121913592	122008919
CFAP251_chr12_121913592_122008919	0/0	t0003	280	1	0	0	0	0	1	copy fasta	CFAP251	chr12	121913592	122008919
CFAP276_chr1_109100951_109117747	1/1	t0001	146	401	100	76	169	18	36	copy fasta	CFAP276	chr1	109100951	109117747
CFAP276_chr1_109100951_109117747	0/0	t0002	146	3	0	0	3	0	0	copy fasta	CFAP276	chr1	109100951	109117747
CFAP298_chr21_32594354_32617377	1/0	t0001	2644	106	24	22	42	7	10	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/1	t0002	2644	106	5	25	56	4	15	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0003	2643	55	25	6	19	2	3	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0004	2644	28	0	7	21	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0005	2645	18	5	3	9	0	1	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0006	2645	18	0	2	12	1	3	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0007	2645	7	0	0	7	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0008	2663	6	3	2	0	0	1	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0009	2644	6	0	0	6	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0010	2660	6	6	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0011	2633	6	6	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0012	2603	6	0	0	4	1	1	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0013	2645	5	0	3	2	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0014	2663	4	1	1	0	1	1	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0015	2643	3	3	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0016	2643	3	0	2	0	0	1	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0017	2660	3	0	0	0	1	2	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0018	2644	2	2	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0019	2644	2	0	0	2	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0020	2643	2	0	0	2	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0021	2664	2	1	1	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0022	2629	2	2	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0023	2644	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0024	2664	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0025	2645	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0026	2645	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0027	2645	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0028	2645	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0029	2644	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0030	2644	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0031	2644	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0032	2644	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0033	2644	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0034	2644	1	0	0	1	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0035	2643	1	0	0	0	0	1	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0036	2643	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0037	2662	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0038	2677	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0039	2662	1	0	0	0	1	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0040	2629	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0041	2576	1	1	0	0	0	0	copy fasta	CFAP298	chr21	32594354	32617377
CFAP298_chr21_32594354_32617377	0/0	t0042	2644	1	0	0	0	0	1	copy fasta	CFAP298	chr21	32594354	32617377
CFAP299_chr4_80330730_80968750	0/0	t0001	178	85	36	11	34	0	4	copy fasta	CFAP299	chr4	80330730	80968750
CFAP299_chr4_80330730_80968750	0/0	t0002	178	11	10	1	0	0	0	copy fasta	CFAP299	chr4	80330730	80968750
CFAP300_chr11_102042437_102089554	0/1	t0001	1390	177	28	41	92	0	15	copy fasta	CFAP300	chr11	102042437	102089554