JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP300_chr11_102042437_102089554	1/0	t0002	1390	105	13	18	51	5	17	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	t0003	1391	44	22	11	6	1	4	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	t0004	1390	10	10	0	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	t0005	1390	4	4	0	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	t0006	1390	2	1	1	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	t0007	1390	2	0	0	2	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	t0008	1390	1	0	1	0	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP300_chr11_102042437_102089554	0/0	t0009	1390	1	0	0	1	0	0	copy fasta	CFAP300	chr11	102042437	102089554
CFAP36_chr2_55514718_55550079	1/1	t0001	156	397	91	64	184	14	42	copy fasta	CFAP36	chr2	55514718	55550079
CFAP36_chr2_55514718_55550079	0/0	t0002	156	3	3	0	0	0	0	copy fasta	CFAP36	chr2	55514718	55550079
CFAP410_chr21_44323944_44344390	1/1	t0001	1451	273	23	53	154	13	28	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0002	1451	87	22	18	26	1	20	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0003	1451	19	8	5	6	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0004	1451	8	8	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0005	1451	6	6	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0006	1451	5	5	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0007	1451	5	4	1	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0008	1451	4	3	1	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0009	1451	3	3	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0010	1451	3	3	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0011	1451	3	2	1	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0012	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0013	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0014	1451	1	0	0	1	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0015	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0016	1451	1	0	0	1	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0017	1451	1	0	0	1	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0018	1451	1	0	0	1	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0019	1451	1	0	0	1	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0020	1451	1	0	0	1	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0021	1451	1	0	0	0	0	1	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0022	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0023	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0024	1451	1	0	0	0	0	1	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0025	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0026	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0027	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0028	1451	1	0	1	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0029	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0030	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP410_chr21_44323944_44344390	0/0	t0031	1451	1	1	0	0	0	0	copy fasta	CFAP410	chr21	44323944	44344390
CFAP418_chr8_95239913_95274201	1/1	t0001	2717	241	55	40	113	8	23	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0002	2717	48	5	9	14	4	16	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0003	2717	18	0	2	11	1	4	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0004	2717	17	0	0	17	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0005	2719	11	5	5	0	1	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0006	2716	6	6	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0007	2716	5	0	0	5	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0008	2716	5	1	1	3	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0009	2718	3	3	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201