Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABAT_chr16_8669617_8789570	0/0	t0029	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0030	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0031	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0032	3276	1	0	1	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	1/0	t0033	3277	1	0	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0034	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0035	3277	1	0	0	0	0	1	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0036	3277	1	0	0	0	0	1	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0037	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0038	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0039	3277	1	0	0	0	0	1	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0040	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0041	3273	1	0	0	0	0	1	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0042	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0043	3277	1	0	0	0	0	1	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0044	3277	1	0	0	1	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0045	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0046	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABAT_chr16_8669617_8789570	0/0	t0047	3277	1	1	0	0	0	0	copy fasta	ABAT	chr16	8669617	8789570
ABCA10_chr17_69143007_69233824	0/1	t0001	1377	134	18	27	56	10	22	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0002	1377	92	10	11	60	2	9	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0003	1377	40	4	14	16	1	5	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0004	1377	24	20	4	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0005	1377	12	1	6	4	0	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0006	1377	11	11	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0007	1377	9	5	4	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	1/0	t0008	1377	8	1	0	4	1	1	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0009	1377	6	6	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0010	1377	3	3	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0011	1377	2	0	1	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0012	1377	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0013	1377	1	0	0	1	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0014	1377	1	0	1	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0015	1377	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0016	1377	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0017	1377	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA10_chr17_69143007_69233824	0/0	t0018	1377	1	1	0	0	0	0	copy fasta	ABCA10	chr17	69143007	69233824
ABCA12_chr2_214926542_215143626	1/1	t0001	1511	54	9	14	20	2	7	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0002	1515	36	4	12	14	1	5	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0003	1511	23	13	6	3	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0004	1512	14	14	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0005	1511	14	7	4	0	1	2	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0006	1511	11	10	1	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0007	1511	7	7	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0008	1513	7	3	0	4	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0009	1510	4	4	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0010	1513	4	0	0	3	0	1	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0011	1515	3	0	0	3	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0012	1517	3	1	1	1	0	0	copy fasta	ABCA12	chr2	214926542	215143626
ABCA12_chr2_214926542_215143626	0/0	t0013	1512	2	2	0	0	0	0	copy fasta	ABCA12	chr2	214926542	215143626