JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
CFAP418_chr8_95239913_95274201	0/0	t0010	2717	3	3	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0011	2717	3	3	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0012	2717	3	0	2	1	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0013	2718	2	0	0	2	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0014	2717	2	0	2	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0015	2718	2	0	1	0	0	1	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0016	2717	2	0	0	2	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0017	2717	2	0	1	1	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0018	2717	2	2	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0019	2717	2	0	0	2	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0020	2718	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0021	2717	1	0	1	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0022	2717	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0023	2718	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0024	2718	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0025	2718	1	0	0	1	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0026	2717	1	0	0	1	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0027	2717	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0028	2718	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0029	2719	1	1	0	0	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP418_chr8_95239913_95274201	0/0	t0030	2717	1	0	0	1	0	0	copy fasta	CFAP418	chr8	95239913	95274201
CFAP43_chr10_104124888_104237364	1/1	t0001	370	296	79	46	142	6	21	copy fasta	CFAP43	chr10	104124888	104237364
CFAP43_chr10_104124888_104237364	0/0	t0002	370	10	1	6	0	2	1	copy fasta	CFAP43	chr10	104124888	104237364
CFAP44_chr3_113281930_113446493	0/0	t0001	4674	52	2	10	24	5	11	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0002	4674	38	3	7	24	0	4	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0003	4674	34	4	8	15	4	3	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0004	4674	19	2	3	13	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0005	4674	13	0	6	6	1	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0006	4674	11	6	0	4	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0007	4674	9	0	0	9	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0008	4674	9	0	3	5	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0009	4672	9	8	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/1	t0010	4674	8	0	0	7	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0011	4674	7	5	1	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0012	4674	7	1	0	3	1	2	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0013	4674	6	5	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0014	4674	6	6	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0015	4674	6	0	0	6	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0016	4674	6	0	1	4	0	1	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0017	4674	5	2	0	3	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0018	4674	5	0	2	1	2	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0019	4674	4	0	0	4	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0020	4674	4	0	0	4	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0021	4674	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0022	4674	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0023	4674	3	1	2	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0024	4674	3	2	1	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0025	4674	3	0	2	1	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0026	4672	3	3	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493
CFAP44_chr3_113281930_113446493	0/0	t0027	4674	2	2	0	0	0	0	copy fasta	CFAP44	chr3	113281930	113446493